AT3G43410

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017910
Physical Location & Seq
Reverse (-)
15340504 .. 15341109
606 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G43410.1

Sequence Viewer

Length: 369 bp
ATGGAAAATCTTGGACATAGGTTCTTGATGAGTAGCGATGCTAACTATTTGGGGAGGCTTAAATCTTTGGCGGTGGCCGTGGATATAATGAATACGAAAGAACTTGAGATGTTCAGGCAAATTTTAGTTGCATGGAATGGAATCATGAAAAAGTTGGATATATGTTTTAAGATGTTTAATTTCAGTGGTTTGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTATAACGCAAGGGACCGTGATGAACACGATGATGATCGAGACGTCTTTGATTCCTCCAGTTGAGAAGTTTTATATAGAAGCGGCCGTTGCAAAACTGATGGAACTTCCAAAGGGTAATAAGAACCTTAGTATTGGATACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

122

Amino Acids

13.91

Weight (kDa)

9.48

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AatII GACGTC 1 cut(s) 269
AccII CGCG 1 cut(s) 220
AciI CCGC 2 cut(s) 71, 305
AcoI YGGCCR 2 cut(s) 75, 306
AcsI RAATTY 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 266
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 257
AoxI GGCC 2 cut(s) 75, 306
ApoI RAATTY 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 237
AvaII GGWCC 1 cut(s) 237
BccI CCATC 1 cut(s) 316
BceAI ACGGC 2 cut(s) 62, 293
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciVI GTATCC 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 257
BfuI GTATCC 1 cut(s) 353
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 281
Bse8I GATNNNNATC 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 257
BseNI ACTGG 1 cut(s) 281
BseX3I CGGCCG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 220
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 77, 308
BsiEI CGRYCG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 257
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 2 cut(s) 77, 308
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 2 cut(s) 71, 305
BspANI GGCC 2 cut(s) 77, 308
BspFNI CGCG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 258
BssNI GRCGYC 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 204, 241
BstACI GRCGYC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 220
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 258
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstUI CGCG 1 cut(s) 220
BstZI CGGCCG 1 cut(s) 306
BsuI GTATCC 1 cut(s) 353
BsuRI GGCC 2 cut(s) 77, 308
BtgI CCRYGG 1 cut(s) 78
BtgZI GCGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 190
CciI TCATGA 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 237
CviAII CATG 2 cut(s) 132, 145
CviJI RGCY 4 cut(s) 58, 77, 215, 308
CviKI_1 RGCY 4 cut(s) 58, 77, 215, 308
DdeI CTNAG 1 cut(s) 350
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
EaeI YGGCCR 2 cut(s) 75, 306
EagI CGGCCG 1 cut(s) 306
EclXI CGGCCG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 237
Eco52I CGGCCG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 2 cut(s) 135, 148
FaiI YATR 9 cut(s) 18, 86, 133, 146, 161, 163, 227, 297, 299
FaqI GGGAC 1 cut(s) 250
FatI CATG 2 cut(s) 131, 144
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 77, 308
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 2 cut(s) 135, 148
HinfI GANTC 2 cut(s) 141, 274
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 3 cut(s) 25, 145, 262
HpyCH4III ACNGT 2 cut(s) 204, 241
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 131, 209, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 266
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 2 cut(s) 135, 148
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 2 cut(s) 100, 294
LweI GCATC 1 cut(s) 28
MaeII ACGT 1 cut(s) 266
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MluCI AATT 2 cut(s) 120, 178
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 2 cut(s) 48, 288
MseI TTAA 3 cut(s) 60, 168, 177
MslI CAYNNNNRTG 1 cut(s) 254
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 1 cut(s) 258
NlaIII CATG 2 cut(s) 135, 148
NlaIV GGNNCC 1 cut(s) 238
PagI TCATGA 1 cut(s) 144
PfeI GAWTC 2 cut(s) 141, 274
PkrI GCNGC 1 cut(s) 307
PsiI TTATAA 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 3 cut(s) 60, 168, 177
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 237
SetI ASST 4 cut(s) 23, 217, 269, 351
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 120, 178
SsiI CCGC 2 cut(s) 71, 305
TaaI ACNGT 2 cut(s) 204, 241
TaiI ACGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 261
TasI AATT 2 cut(s) 120, 178
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 2 cut(s) 141, 274
Tru1I TTAA 3 cut(s) 60, 168, 177
Tru9I TTAA 3 cut(s) 60, 168, 177
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 104, 161, 260
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 120
ZraI GACGTC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.