AT5G35945

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017910
Physical Location & Seq
Forward (+)
14093675 .. 14094286
612 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35945.1

Sequence Viewer

Length: 384 bp
ATGGAAAATCTTGGGCATAGATTCTTGATGAGTACAGATGCTAACTATTTTGGGAGGCTTAAATCTTTGGCGCATGACAATGTGTATAAGGAAGAAAGTGCATCTTCCATTGGTGGAACACAAAAGAAAATGTGGGAGGAGAAAAACTCTTTTCCCAATGCTGAATTTCGAGTGAAAGCTGTGTCGATTTTTGATTTATGTGGTTTGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTATAAAGCATGGGACCGTGATGAACAAATTGATGATCGAGACGTTTTCGGTTCCTCCAGTTGAGAAGTTTTATATTGAAGCGGCCGTTGCCAAACTGATGGAACTTCCAAAGGGTAACGAGAACCTTAGTATTGGATACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

127

Amino Acids

14.42

Weight (kDa)

8.99

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccII CGCG 1 cut(s) 235
AciI CCGC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 34
AgsI TTSAA 2 cut(s) 208, 317
AluBI AGCT 2 cut(s) 179, 230
AluI AGCT 2 cut(s) 179, 230
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 252
AvaII GGWCC 1 cut(s) 252
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BciVI GTATCC 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 272
BfuI GTATCC 1 cut(s) 368
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 253, 291
BmsI GCATC 2 cut(s) 28, 110
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 323
BsiEI CGRYCG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 272
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 1 cut(s) 323
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 323
BspFNI CGCG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 253, 291
BsrI ACTGG 1 cut(s) 296
BssMI GATC 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 219, 256
BstDEI CTNAG 1 cut(s) 365
BstFNI CGCG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 273
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstUI CGCG 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 337
BstZI CGGCCG 1 cut(s) 321
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 323
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 33
CviAII CATG 2 cut(s) 74, 248
CviJI RGCY 4 cut(s) 58, 179, 230, 323
CviKI_1 RGCY 4 cut(s) 58, 179, 230, 323
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 365
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
EclXI CGGCCG 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 252
Eco52I CGGCCG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 2 cut(s) 77, 251
FaiI YATR 7 cut(s) 18, 75, 87, 199, 242, 249, 312
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 1 cut(s) 265
FatI CATG 2 cut(s) 73, 247
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 323
HhaI GCGC 1 cut(s) 73
Hin1II CATG 2 cut(s) 77, 251
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 383
Hpy188III TCNNGA 2 cut(s) 25, 277
HpyCH4III ACNGT 2 cut(s) 219, 256
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 101, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 2 cut(s) 77, 251
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 273
LpnPI CCDG 1 cut(s) 309
LweI GCATC 2 cut(s) 28, 110
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 353
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 96, 104
MluCI AATT 2 cut(s) 164, 266
MnlI CCTC 3 cut(s) 48, 130, 303
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 78
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 1 cut(s) 273
NlaIII CATG 2 cut(s) 77, 251
NlaIV GGNNCC 2 cut(s) 253, 291
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 322
PsiI TTATAA 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 253, 291
PspPI GGNCC 1 cut(s) 252
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 252
SetI ASST 4 cut(s) 181, 232, 284, 366
SfaNI GCATC 2 cut(s) 28, 110
SinI GGWCC 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 78
Sse9I AATT 2 cut(s) 164, 266
SsiI CCGC 1 cut(s) 320
TaaI ACNGT 2 cut(s) 219, 256
TaiI ACGT 1 cut(s) 284
TaqI TCGA 3 cut(s) 169, 185, 276
TasI AATT 2 cut(s) 164, 266
TatI WGTACW 1 cut(s) 32
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 252
XapI RAATTY 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.