AT1G78470

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017910
Physical Location & Seq
Forward (+)
29521770 .. 29523191
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78470.1

Sequence Viewer

Length: 1029 bp
ATGCTTGCTTCTTGGATCCAATCACTGACTAGTATGAAACACACCAAAAATCTTATCCTTGCAAATTTTAATGGTCGCTTCGCACCAACAGGTGAAGACAATGTGCTCAAGCTGTCCACAGAGACATTCAACCATCCAAGCCTAAGAACACTCTCGCTATATCAATACATATTACAAGATGCACAAGCTTTTAACAATTGTAAAAATCTCAAGTACCTTGACCTGTTTCAAATCTTTGCTGAGGTTGATGTTTTCAACGAAGTCATCTCGTCTTGCCCCTCCCTCGAGGTTCTTATCCTACAAATCATTTTCTTCAACCCCAGTGGTCATTTGAAGATTGATCATAAAACGTTAAGGATCTTGTCCATGTCATGCAACCAAATTGATAGCATTGAAGTGCGTGCAGCTCGTCTTGATATTCTCTCCATAGAATATATCCCATGTGAGAGTGATAACGTCGTTCTCGAAATTCCTAGACTCCAGTTTGGTAGAAACTATTGGGTAGCAGGAAGACTCTTGCCTCATACTAGCATCAACATCTCATGTCCCCCTCAGAAGCAAGAAAGCAACGGGATGGTGAAGTGGGATACCAACTATGCAACATCACCTGCATCTTTATCTGTGAGTTTAGATTTGAAGAATCCTCGAGAAGTAGAAGTGCTAAGGAAAATCTTAGCTGTGTGGACTGAAAAAATGATAGAAGTTGAAATATCATTTAAGAATAACAATCCTCTTGGGGAAGAAGGCAATTCTTCTGACGGTGGAGCACAAAACAATTTATGGGAGAAGGCAGAACCGTTTCCCAATGCTGACTTTCGTGTGGATACTATATGGATGCACAATTTCAAGGGTTCAAATAAAGAACAATTTGCACTAGCGTCGCGTTTCGTGATGCAAAAGACAGTAATGAAGAAGATGATGATTAAGACATCATTTGATGAAAAGAAGAAGAAAGAGATAGAAGCGGCAGTTGCCAAGCTAAAGGAACTTCCAAAAGGTAACGAGGAGCTTAGTATCGAATGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

342

Amino Acids

38.99

Weight (kDa)

6.35

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 2 - 140 3e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 616
AbsI CCTCGAGG 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 616
AccII CGCG 1 cut(s) 883
AciI CCGC 1 cut(s) 965
AclI AACGTT 1 cut(s) 350
AclWI GGATC 3 cut(s) 10, 23, 365
AcsI RAATTY 2 cut(s) 64, 468
AfaI GTAC 1 cut(s) 215
AhlI ACTAGT 1 cut(s) 29
AluBI AGCT 6 cut(s) 112, 188, 407, 677, 979, 1009
AluI AGCT 6 cut(s) 112, 188, 407, 677, 979, 1009
Alw21I GWGCWC 2 cut(s) 108, 769
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 3 cut(s) 10, 23, 365
Ama87I CYCGRG 2 cut(s) 284, 645
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 2 cut(s) 64, 468
Asp700I GAANNNNTTC 1 cut(s) 798
AsuHPI GGTGA 3 cut(s) 104, 589, 597
AvaI CYCGRG 2 cut(s) 284, 645
BamHI GGATCC 1 cut(s) 15
BbsI GAAGAC 2 cut(s) 102, 517
Bbv12I GWGCWC 2 cut(s) 108, 769
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 416
BccI CCATC 2 cut(s) 141, 568
BcgI CGANNNNNNTGC 2 cut(s) 861, 895
BciVI GTATCC 2 cut(s) 580, 817
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 116
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 4 cut(s) 30, 474, 528, 875
BfuAI ACCTGC 1 cut(s) 616
BfuI GTATCC 2 cut(s) 580, 817
BisI GCNGC 2 cut(s) 405, 966
BlsI GCNGC 2 cut(s) 406, 967
BmeT110I CYCGRG 2 cut(s) 284, 645
BmiI GGNNCC 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 5 cut(s) 169, 540, 620, 825, 882
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 2 cut(s) 102, 517
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 2 cut(s) 240, 662
BpuEI CTTGAG 2 cut(s) 92, 194
Bse1I ACTGG 2 cut(s) 321, 481
BseGI GGATG 3 cut(s) 133, 579, 840
BseMII CTCAG 2 cut(s) 231, 566
BseNI ACTGG 2 cut(s) 321, 481
BseRI GAGGAG 1 cut(s) 1019
BseXI GCAGC 1 cut(s) 416
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 883
BsiHKAI GWGCWC 2 cut(s) 108, 769
BsiHKCI CYCGRG 2 cut(s) 284, 645
BslFI GGGAC 1 cut(s) 531
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 531
BsmI GAATGC 1 cut(s) 1025
BsoBI CYCGRG 2 cut(s) 284, 645
Bsp1286I GDGCHC 2 cut(s) 108, 769
Bsp143I GATC 3 cut(s) 15, 340, 357
BspACI CCGC 1 cut(s) 965
BspCNI CTCAG 2 cut(s) 232, 565
BspFNI CGCG 1 cut(s) 883
BspLI GGNNCC 1 cut(s) 17
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 3 cut(s) 10, 23, 365
BsrI ACTGG 2 cut(s) 321, 481
BssMI GATC 3 cut(s) 15, 340, 357
Bst4CI ACNGT 3 cut(s) 761, 798, 904
BstC8I GCNNGC 2 cut(s) 6, 402
BstDEI CTNAG 6 cut(s) 143, 240, 552, 662, 673, 1010
BstF5I GGATG 3 cut(s) 133, 579, 840
BstFNI CGCG 1 cut(s) 883
BstKTI GATC 3 cut(s) 18, 343, 360
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 3 cut(s) 15, 340, 357
BstMWI GCNNNNNNNGC 1 cut(s) 971
BstUI CGCG 1 cut(s) 883
BstV1I GCAGC 1 cut(s) 416
BstV2I GAAGAC 2 cut(s) 102, 517
BstX2I RGATCY 2 cut(s) 15, 357
BstYI RGATCY 2 cut(s) 15, 357
BsuI GTATCC 2 cut(s) 580, 817
BtsCI GGATG 3 cut(s) 133, 579, 840
BtsIMutI CAGTG 2 cut(s) 23, 328
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 6, 402
CseI GACGC 1 cut(s) 867
Csp6I GTAC 1 cut(s) 214
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 4 cut(s) 367, 372, 441, 543
CviJI RGCY 7 cut(s) 112, 141, 188, 407, 677, 979, 1009
CviKI_1 RGCY 7 cut(s) 112, 141, 188, 407, 677, 979, 1009
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 6 cut(s) 143, 240, 552, 662, 673, 1010
DpnI GATC 3 cut(s) 17, 342, 359
DpnII GATC 3 cut(s) 15, 340, 357
Eco88I CYCGRG 2 cut(s) 284, 645
FaeI CATG 4 cut(s) 370, 375, 444, 546
FaqI GGGAC 1 cut(s) 531
FatI CATG 4 cut(s) 366, 371, 440, 542
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 405, 966
FokI GGATG 3 cut(s) 120, 586, 847
Fsp4HI GCNGC 2 cut(s) 405, 966
FspBI CTAG 4 cut(s) 30, 474, 528, 875
GluI GCNGC 2 cut(s) 405, 966
GsuI CTGGAG 1 cut(s) 464
HgaI GACGC 1 cut(s) 867
Hin1II CATG 4 cut(s) 370, 375, 444, 546
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 3 cut(s) 477, 513, 640
HphI GGTGA 3 cut(s) 104, 589, 597
Hpy166II GTNNAC 2 cut(s) 117, 684
Hpy188I TCNGA 2 cut(s) 555, 757
Hpy188III TCNNGA 4 cut(s) 413, 464, 647, 889
Hpy8I GTNNAC 2 cut(s) 117, 684
Hpy99I CGWCG 2 cut(s) 461, 883
HpyAV CCTTC 2 cut(s) 737, 781
HpyCH4III ACNGT 3 cut(s) 761, 798, 904
HpyCH4IV ACGT 2 cut(s) 350, 456
HpyCH4V TGCA 9 cut(s) 62, 182, 375, 404, 599, 611, 838, 872, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 971
HpyF3I CTNAG 6 cut(s) 143, 240, 552, 662, 673, 1010
HpySE526I ACGT 2 cut(s) 350, 456
Hsp92II CATG 4 cut(s) 370, 375, 444, 546
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 3 cut(s) 15, 340, 357
LmnI GCTCC 2 cut(s) 764, 1006
LpnPI CCDG 6 cut(s) 75, 236, 334, 492, 494, 621
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 5 cut(s) 169, 540, 620, 825, 882
MaeI CTAG 4 cut(s) 30, 474, 528, 875
MaeII ACGT 2 cut(s) 350, 456
MaeIII GTNAC 1 cut(s) 998
MalI GATC 3 cut(s) 17, 342, 359
MboI GATC 3 cut(s) 15, 340, 357
MfeI CAATTG 1 cut(s) 196
MflI RGATCY 2 cut(s) 15, 357
MhlI GDGCHC 2 cut(s) 108, 769
MluCI AATT 8 cut(s) 64, 196, 381, 468, 748, 775, 841, 866
MlyI GAGTC 2 cut(s) 471, 507
MnlI CCTC 9 cut(s) 235, 280, 289, 293, 531, 561, 654, 741, 997
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 5 cut(s) 69, 192, 353, 717, 924
MslI CAYNNNNRTG 1 cut(s) 395
MunI CAATTG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 1025
MvnI CGCG 1 cut(s) 883
MwoI GCNNNNNNNGC 1 cut(s) 971
NdeII GATC 3 cut(s) 15, 340, 357
NlaIII CATG 4 cut(s) 370, 375, 444, 546
NlaIV GGNNCC 1 cut(s) 17
PaeR7I CTCGAG 2 cut(s) 284, 645
PaqCI CACCTGC 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PctI GAATGC 1 cut(s) 1025
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 1 cut(s) 640
PkrI GCNGC 2 cut(s) 406, 967
PleI GAGTC 2 cut(s) 471, 507
PpsI GAGTC 2 cut(s) 471, 507
Psp1406I AACGTT 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 284
PsuI RGATCY 2 cut(s) 15, 357
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 5 cut(s) 69, 192, 353, 717, 924
SatI GCNGC 2 cut(s) 405, 966
Sau3AI GATC 3 cut(s) 15, 340, 357
SchI GAGTC 2 cut(s) 471, 507
SduI GDGCHC 2 cut(s) 108, 769
SfaNI GCATC 5 cut(s) 169, 540, 620, 825, 882
Sfr274I CTCGAG 2 cut(s) 284, 645
SlaI CTCGAG 2 cut(s) 284, 645
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 4 cut(s) 107, 209, 284, 645
SmoI CTYRAG 4 cut(s) 107, 209, 284, 645
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 8 cut(s) 64, 196, 381, 468, 748, 775, 841, 866
SsiI CCGC 1 cut(s) 965
SspMI CTAG 4 cut(s) 30, 474, 528, 875
TaaI ACNGT 3 cut(s) 761, 798, 904
TaiI ACGT 2 cut(s) 353, 459
TaqI TCGA 4 cut(s) 285, 465, 646, 1017
TasI AATT 8 cut(s) 64, 196, 381, 468, 748, 775, 841, 866
TauI GCSGC 1 cut(s) 968
TfiI GAWTC 1 cut(s) 640
Tru1I TTAA 5 cut(s) 69, 192, 353, 717, 924
Tru9I TTAA 5 cut(s) 69, 192, 353, 717, 924
TscAI CASTG 2 cut(s) 30, 328
TseI GCWGC 1 cut(s) 404
TspDTI ATGAA 3 cut(s) 50, 923, 954
TspRI CASTG 2 cut(s) 30, 328
XapI RAATTY 2 cut(s) 64, 468
XhoI CTCGAG 2 cut(s) 284, 645
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 4 cut(s) 30, 474, 528, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.