Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012088

Physical Location & Seq

Genomic Coordinates Forward (+)

25861094 .. 25863534

Gene Structure 2441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTGCGCTAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGACAGTTCTGAAGCCATGAACAACATACAAAATTACCAAAATGACCTCTTCTTTCACCAACTCATCTCTCATCATCACCATCATCATCATGATCCTTCTCAATCTGAAACTTTGGGAGCATCCGGTAACGTTGGATCTGGTTTCACTATCTTCTCTCAAGATTCCGTCTCTCCAATATGGTCTCTACCTCCACCTACCTCGATCCAACCACCATTTGATCAGTTTCCTCCTCCTTCTTCTTCTCCAGCATCTTTCTACGGAAGTTTCTTCAACAGAAGTCGAGCTCATCATCAGGGATTACAGTTTGGGTACGAGGGTTTTGGTGGAGCCACGTCAGCAGCACATCATCATCATGAACAACTTCGGATCTTGTCGGAAGCTTTAGGTCCGGTAGTACAAGCCGGGTCCGGTCCTTTTGGGTTACAAGCTGAGTTAGGGAAGATGACAGCACAAGAGATCATGGACGCTAAAGCTTTGGCTGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTCGCTAAGCTCCGTAGCATATTACCCAACACCACCAAAACGGATAAAGCGTCGTTACTAGCTGAAGTGATCCAACATGTGAAAGAGTTGAAGAGAGAGACTTCAGTGATCTCAGAGACAAATCTTGTCCCAACGGAAAGCGATGAGTTAACGGTAGCTTTCACGGAGGAGGAAGAAACCGGAGATGGCAGATTTGTAATTAAAGCGTCGCTTTGCTGTGAAGACAGGTCGGATCTCTTGCCTGACATGATTAAAACATTGAAAGCTATGCGTCTCAAAACGCTCAAGGCGGAGATAACCACCGTTGGGGGACGAGTCAAGAACGTTTTGTTTGTTACCGGAGAAGAGAGCTCCGGTGAGGAAGTGGAGGAAGAGTACTGTATAGGGACGATTGAGGAAGCTTTGAAAGCGGTGATGGAGAAGAGCAATGTAGAGGAATCATCTTCTTCTGGAAATGCTAAGAGACAGAGAATGAGTAGTCACAACACTATCACTATCGTCGAACAACAACAACAATATAATCAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009718 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042440 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071695 GO:0071704 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

368

Amino Acids

40.82

Weight (kDa)

5.41

Isoelectric Point (pI)

66.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	176 - 223	1.8e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68810
fragaria_vesca	FvH4_4g28130 FvH4_4g28130
malus_domestica	MD13G1047100.v1.1 MD16G1048700.v1.1
prunus_persica	Prupe.1G304900_v2.0.a1
pyrus_communis	pycom13g04120 pycom16g04260
rosa_chinensis	RchiOBHm_Chr4g0435901
rosa_laevigata	RLG00000006551
rosa_multiflora	Rmu_sc0003165.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377070
rosa_rugosa	Rorug04G0290700 Rorug04G0290700
rosa_samantha	Rh4AG344900 Rh4BG353700 Rh4CG368100 Rh4DG347500
rosa_wichuraiana	Rw4G030120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	866, 986
AclI	AACGTT	2 cut(s)	168, 900
AclWI	GGATC	6 cut(s)	125, 181, 235, 413, 640, 816
AcuI	CTGAAG	3 cut(s)	69, 660, 663
AfaI	GTAC	3 cut(s)	350, 435, 953
AfiI	CCNNNNNNNGG	1 cut(s)	882
AflIII	ACRYGT	1 cut(s)	652
AgsI	TTSAA	5 cut(s)	310, 525, 667, 838, 982
AjiI	CACGTC	1 cut(s)	372
Alw21I	GWGCWC	2 cut(s)	325, 929
Alw26I	GTCTC	6 cut(s)	211, 225, 668, 686, 854, 1033
AlwI	GGATC	6 cut(s)	125, 181, 235, 413, 640, 816
ApeKI	GCWGC	2 cut(s)	377, 518
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	425, 444, 449
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	4 cut(s)	86, 107, 944, 1000
AvaII	GGWCC	3 cut(s)	425, 444, 449
BaeI	ACNNNNGTAYC	2 cut(s)	340, 373
BanII	GRGCYC	2 cut(s)	325, 929
BbsI	GAAGAC	2 cut(s)	45, 804
Bbv12I	GWGCWC	2 cut(s)	325, 929
BbvI	GCAGC	2 cut(s)	389, 505
BccI	CCATC	3 cut(s)	126, 755, 985
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	6 cut(s)	211, 225, 668, 686, 854, 1033
BfaI	CTAG	1 cut(s)	635
BisI	GCNGC	2 cut(s)	378, 519
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	2 cut(s)	379, 520
BmcAI	AGTACT	1 cut(s)	953
Bme1390I	CCNGG	1 cut(s)	442
Bme18I	GGWCC	3 cut(s)	425, 444, 449
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	3 cut(s)	425, 444, 449
BmiI	GGNNCC	2 cut(s)	367, 445
BmrFI	CCNGG	1 cut(s)	442
BmsI	GCATC	2 cut(s)	167, 296
BpiI	GAAGAC	2 cut(s)	45, 804
BpmI	CTGGAG	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	2 cut(s)	180, 845
BpuMI	CCSGG	1 cut(s)	442
BsaI	GGTCTC	1 cut(s)	225
BsaWI	WCCGGW	6 cut(s)	161, 427, 446, 755, 914, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	935, 965
Bsc4I	CCNNNNNNNGG	1 cut(s)	882
Bse3DI	GCAATG	1 cut(s)	1009
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	882
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	3 cut(s)	459, 534, 702
BseRI	GAGGAG	2 cut(s)	258, 758
BseXI	GCAGC	2 cut(s)	389, 505
BsiHKAI	GWGCWC	2 cut(s)	325, 929
BsiSI	CCGG	7 cut(s)	162, 428, 441, 447, 756, 915, 930
BslFI	GGGAC	3 cut(s)	689, 900, 976
BslI	CCNNNNNNNGG	1 cut(s)	882
BsmAI	GTCTC	6 cut(s)	211, 225, 668, 686, 854, 1033
BsmBI	CGTCTC	2 cut(s)	211, 854
BsmFI	GGGAC	3 cut(s)	689, 900, 976
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	325, 929
Bsp143I	GATC	9 cut(s)	130, 173, 240, 256, 405, 495, 645, 684, 808
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	2 cut(s)	866, 986
BspCNI	CTCAG	3 cut(s)	460, 535, 701
BspHI	TCATGA	2 cut(s)	127, 391
BspLI	GGNNCC	2 cut(s)	367, 445
BspPI	GGATC	6 cut(s)	125, 181, 235, 413, 640, 816
BspQI	GCTCTTC	1 cut(s)	992
BspTNI	GGTCTC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	1009
BssMI	GATC	9 cut(s)	130, 173, 240, 256, 405, 495, 645, 684, 808
Bst4CI	ACNGT	5 cut(s)	44, 342, 730, 880, 956
Bst6I	CTCTTC	6 cut(s)	92, 550, 662, 915, 942, 992
BstDEI	CTNAG	6 cut(s)	9, 468, 543, 582, 688, 1035
BstF5I	GGATG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	9 cut(s)	133, 176, 243, 259, 408, 498, 648, 687, 811
BstMAI	GTCTC	6 cut(s)	211, 225, 668, 686, 854, 1033
BstMBI	GATC	9 cut(s)	130, 173, 240, 256, 405, 495, 645, 684, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 518, 983
BstNSI	RCATGY	1 cut(s)	656
BstSCI	CCNGG	1 cut(s)	440
BstV1I	GCAGC	2 cut(s)	389, 505
BstV2I	GAAGAC	2 cut(s)	45, 804
BstX2I	RGATCY	3 cut(s)	173, 405, 808
BstYI	RGATCY	3 cut(s)	173, 405, 808
BtgZI	GCGATG	1 cut(s)	732
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	687
CciI	TCATGA	2 cut(s)	127, 391
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	425, 444, 449
CseI	GACGC	4 cut(s)	512, 615, 771, 836
Csp6I	GTAC	3 cut(s)	349, 434, 952
CviAII	CATG	6 cut(s)	55, 128, 392, 499, 653, 823
CviQI	GTAC	3 cut(s)	349, 434, 952
DdeI	CTNAG	6 cut(s)	9, 468, 543, 582, 688, 1035
DpnI	GATC	9 cut(s)	132, 175, 242, 258, 407, 497, 647, 686, 810
DpnII	GATC	9 cut(s)	130, 173, 240, 256, 405, 495, 645, 684, 808
Eam1104I	CTCTTC	6 cut(s)	92, 550, 662, 915, 942, 992
EarI	CTCTTC	6 cut(s)	92, 550, 662, 915, 942, 992
EciI	GGCGGA	1 cut(s)	881
Ecl136II	GAGCTC	2 cut(s)	323, 927
Eco24I	GRGCYC	2 cut(s)	325, 929
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	3 cut(s)	425, 444, 449
Eco53kI	GAGCTC	2 cut(s)	323, 927
Eco57I	CTGAAG	3 cut(s)	69, 660, 663
EcoICRI	GAGCTC	2 cut(s)	323, 927
EcoT38I	GRGCYC	2 cut(s)	325, 929
Esp3I	CGTCTC	2 cut(s)	211, 854
FaeI	CATG	6 cut(s)	58, 131, 395, 502, 656, 826
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	3 cut(s)	689, 900, 976
FatI	CATG	6 cut(s)	54, 127, 391, 498, 652, 822
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	378, 519
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	2 cut(s)	325, 929
Fsp4HI	GCNGC	2 cut(s)	378, 519
FspBI	CTAG	1 cut(s)	635
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	2 cut(s)	378, 519
GsuI	CTGGAG	1 cut(s)	267
HapII	CCGG	7 cut(s)	162, 428, 441, 447, 756, 915, 930
HgaI	GACGC	4 cut(s)	512, 615, 771, 836
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	6 cut(s)	58, 131, 395, 502, 656, 826
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	726
HindII	GTYRAC	1 cut(s)	726
HindIII	AAGCTT	3 cut(s)	417, 510, 975
HinfI	GANTC	5 cut(s)	200, 529, 564, 891, 1013
HpaI	GTTAAC	1 cut(s)	726
HpaII	CCGG	7 cut(s)	162, 428, 441, 447, 756, 915, 930
HphI	GGTGA	4 cut(s)	86, 107, 944, 1000
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	7 cut(s)	49, 145, 405, 415, 691, 808, 1101
Hpy188III	TCNNGA	5 cut(s)	128, 197, 392, 895, 1026
Hpy8I	GTNNAC	1 cut(s)	726
Hpy99I	CGWCG	3 cut(s)	631, 787, 1079
HpyAV	CCTTC	2 cut(s)	144, 282
HpyCH4III	ACNGT	5 cut(s)	44, 342, 730, 880, 956
HpyCH4IV	ACGT	3 cut(s)	168, 371, 900
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 518, 983
HpyF3I	CTNAG	6 cut(s)	9, 468, 543, 582, 688, 1035
HpySE526I	ACGT	3 cut(s)	168, 371, 900
Hsp92II	CATG	6 cut(s)	58, 131, 395, 502, 656, 826
HspAI	GCGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	256
KspAI	GTTAAC	1 cut(s)	726
Kzo9I	GATC	9 cut(s)	130, 173, 240, 256, 405, 495, 645, 684, 808
LguI	GCTCTTC	1 cut(s)	992
LmnI	GCTCC	4 cut(s)	155, 365, 591, 932
Lsp1109I	GCAGC	2 cut(s)	389, 505
LweI	GCATC	2 cut(s)	167, 296
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	3 cut(s)	168, 371, 900
MaeIII	GTNAC	5 cut(s)	164, 459, 630, 910, 1055
MalI	GATC	9 cut(s)	132, 175, 242, 258, 407, 497, 647, 686, 810
MboI	GATC	9 cut(s)	130, 173, 240, 256, 405, 495, 645, 684, 808
MflI	RGATCY	3 cut(s)	173, 405, 808
MhlI	GDGCHC	2 cut(s)	325, 929
MluCI	AATT	2 cut(s)	70, 774
MlyI	GAGTC	2 cut(s)	538, 900
MmeI	TCCRAC	5 cut(s)	151, 268, 393, 673, 786
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	3 cut(s)	725, 777, 828
MslI	CAYNNNNRTG	2 cut(s)	126, 390
MspI	CCGG	7 cut(s)	162, 428, 441, 447, 756, 915, 930
MspR9I	CCNGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	3 cut(s)	374, 518, 983
NciI	CCSGG	1 cut(s)	442
NdeII	GATC	9 cut(s)	130, 173, 240, 256, 405, 495, 645, 684, 808
NlaIII	CATG	6 cut(s)	58, 131, 395, 502, 656, 826
NlaIV	GGNNCC	2 cut(s)	367, 445
NmuCI	GTSAC	1 cut(s)	1055
NspI	RCATGY	1 cut(s)	656
PagI	TCATGA	2 cut(s)	127, 391
PciI	ACATGT	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	992
PcsI	WCGNNNNNNNCGW	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	200, 564, 1013
PkrI	GCNGC	2 cut(s)	379, 520
PleI	GAGTC	2 cut(s)	537, 899
PpsI	GAGTC	2 cut(s)	537, 899
PscI	ACATGT	1 cut(s)	652
Psp124BI	GAGCTC	2 cut(s)	325, 929
Psp1406I	AACGTT	2 cut(s)	168, 900
PspN4I	GGNNCC	2 cut(s)	367, 445
PspPI	GGNCC	3 cut(s)	425, 444, 449
PsuI	RGATCY	3 cut(s)	173, 405, 808
RsaI	GTAC	3 cut(s)	350, 435, 953
RsaNI	GTAC	3 cut(s)	349, 434, 952
RseI	CAYNNNNRTG	2 cut(s)	126, 390
SacI	GAGCTC	2 cut(s)	325, 929
SapI	GCTCTTC	1 cut(s)	992
SaqAI	TTAA	3 cut(s)	725, 777, 828
SatI	GCNGC	2 cut(s)	378, 519
Sau3AI	GATC	9 cut(s)	130, 173, 240, 256, 405, 495, 645, 684, 808
Sau96I	GGNCC	3 cut(s)	425, 444, 449
ScaI	AGTACT	1 cut(s)	953
SchI	GAGTC	2 cut(s)	538, 900
ScrFI	CCNGG	1 cut(s)	442
SduI	GDGCHC	2 cut(s)	325, 929
SfaNI	GCATC	2 cut(s)	167, 296
SinI	GGWCC	3 cut(s)	425, 444, 449
SmiMI	CAYNNNNRTG	2 cut(s)	126, 390
SmlI	CTYRAG	2 cut(s)	195, 860
SmoI	CTYRAG	2 cut(s)	195, 860
Sse9I	AATT	2 cut(s)	70, 774
SsiI	CCGC	2 cut(s)	866, 986
SspMI	CTAG	1 cut(s)	635
SstI	GAGCTC	2 cut(s)	325, 929
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	5 cut(s)	44, 342, 730, 880, 956
TaiI	ACGT	3 cut(s)	171, 374, 903
TaqI	TCGA	3 cut(s)	239, 319, 1077
TasI	AATT	2 cut(s)	70, 774
TatI	WGTACW	2 cut(s)	433, 951
TfiI	GAWTC	3 cut(s)	200, 564, 1013
Tru1I	TTAA	3 cut(s)	725, 777, 828
Tru9I	TTAA	3 cut(s)	725, 777, 828
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	1 cut(s)	1055
TseI	GCWGC	2 cut(s)	377, 518
Tsp45I	GTSAC	1 cut(s)	1055
TspDTI	ATGAA	2 cut(s)	71, 408
TspGWI	ACGGA	6 cut(s)	193, 312, 578, 632, 725, 755
TspRI	CASTG	1 cut(s)	687
VpaK11BI	GGWCC	3 cut(s)	425, 444, 449
XceI	RCATGY	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	635
ZrmI	AGTACT	1 cut(s)	953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.