RLG00000006551

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
8370706 .. 8373617
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006551

Sequence Viewer

Length: 1182 bp
ATGATGAATATTGAAAGGGGTACAAAAGAGAAAGAGAGAAAGAGAGAAGCCTTTGCCTCTTTGTACTGCTCTTTTGTTTTGCCACAACCAAAACCATCTTTCATATATCAAGCAAAGATGATGTGTGGAAAGAAAGAAGATCAAGGCGAGTGTTCACAGAGTCATCATCATCAACAAGTCCAAAACTTTCAAGAGCAGTTGCTTCTCCAACAACAACAACAGATGATGCAACAACAACAACAAAACCACAACGATTTGTACGGTCGAGGATTGATTTTCCCTCATGATCAAGCTCCACCTCCAATCCTGCAGCCATGGACTCTCCCTCCGATCCACGCTTTCAACCCGGCCCACTTTCCTGTCCGAGGGGACAACAACATCGACCCATTTCTAGTCCCTCCTCCAGCTCCCTCGTCATCCTATGCCAGTTTCTTCAACAGAAGAGGAGCTCCATCACTACAGTTCACGTACGACGGTTCAGCATCCGATCATCACCACCTCAGAATTTTATCGGAGGCGCTAGGACCTATGGTCCAGCCCGGTTCGGCTCCTTTCGGTCTTCAAGCCGAGCTGGGGAAGCTGACAGCCCAAGAAATCATGGACGCCAAGGCACTCGCAGCTTCCAAAAGTCACAGCGAGGCCGAAAGAAGAAGAAGAGAGAGAATAAATAACCACCTTGCTAAGCTGCGCAGCCTATTACCCAGCACCACCAAAACGGACAAAGCCTCATTGCTAGCCGAAGTGATACAACATGTGAAGGAGCTGAAACGGCAGACGTCTGTAATAGCAGAGACCAGTCCGGTGCCGACCGAAACAGACGAGCTGATCGTGGACGACGCGTCGGACGAGGAGGGCAAGTTCGTAATCAAAGCCTCGCTGTGTTGCGAGGACCGGTCGGATCTGTTGCCTGATCTCATCAAGACACTCAAGGCATTACGTTTGAGAACATTGAAAGCTGAGATCACAACGTTAGGTGGACGCGTGAAGAATGTTTTGTTCATCACCGGAGAAGAAGATTCAAGTAGTAGCGAAGAGCAGCAGCAACAGCAGTACTGTATAAGCTCGATACAAGAAGCGCTCAAGGCGGTGATGGAGAAGAGCGGCGGAGGAGACGACTCTAATTCTTCAGGCAGTGTTAAACGGCAAAGGACTACTAATAATACCAACATCAATATCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

394

Amino Acids

43.9

Weight (kDa)

6.68

Isoelectric Point (pI)

67.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 209 - 256 1e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012088)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 779
Acc16I TGCGCA 1 cut(s) 689
AccB1I GGYRCC 1 cut(s) 802
AccBSI CCGCTC 1 cut(s) 1101
AccII CGCG 2 cut(s) 839, 981
AciI CCGC 3 cut(s) 1085, 1101, 1104
AclI AACGTT 1 cut(s) 968
AclWI GGATC 2 cut(s) 325, 906
AcsI RAATTY 1 cut(s) 504
AcuI CTGAAG 1 cut(s) 1110
AcyI GRCGYC 2 cut(s) 603, 776
AfaI GTAC 5 cut(s) 22, 65, 260, 470, 1052
AfeI AGCGCT 1 cut(s) 1077
AfiI CCNNNNNNNGG 2 cut(s) 365, 573
AflIII ACRYGT 3 cut(s) 751, 837, 979
AgeI ACCGGT 1 cut(s) 891
AgsI TTSAA 7 cut(s) 14, 191, 343, 436, 563, 952, 1020
AhdI GACNNNNNGTC 2 cut(s) 530, 838
AloI GAACNNNNNNTCC 2 cut(s) 842, 874
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 2 cut(s) 785, 1104
AlwI GGATC 2 cut(s) 325, 906
Aor51HI AGCGCT 1 cut(s) 1077
AoxI GGCC 2 cut(s) 348, 639
ApeKI GCWGC 6 cut(s) 310, 617, 685, 690, 1036, 1039
ApoI RAATTY 1 cut(s) 504
AsiGI ACCGGT 1 cut(s) 891
AspLEI GCGC 3 cut(s) 520, 690, 1078
AspS9I GGNCC 4 cut(s) 349, 524, 532, 889
AsuC2I CCSGG 2 cut(s) 347, 540
AsuHPI GGTGA 3 cut(s) 485, 994, 1099
AsuNHI GCTAGC 1 cut(s) 733
AvaII GGWCC 3 cut(s) 524, 532, 889
BanI GGYRCC 1 cut(s) 802
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 6 cut(s) 322, 629, 672, 702, 1048, 1051
BccI CCATC 3 cut(s) 103, 460, 1084
BceAI ACGGC 2 cut(s) 785, 1157
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 2 cut(s) 347, 540
BcoDI GTCTC 2 cut(s) 785, 1104
BfaI CTAG 3 cut(s) 392, 521, 734
BfmI CTRYAG 2 cut(s) 308, 458
BfoI RGCGCY 2 cut(s) 521, 1079
BisI GCNGC 7 cut(s) 311, 618, 686, 691, 1037, 1040, 1102
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 7 cut(s) 312, 619, 687, 692, 1038, 1041, 1103
BmcAI AGTACT 1 cut(s) 1052
Bme1390I CCNGG 2 cut(s) 347, 540
Bme18I GGWCC 3 cut(s) 524, 532, 889
BmeRI GACNNNNNGTC 2 cut(s) 530, 838
BmgT120I GGNCC 4 cut(s) 349, 524, 532, 889
BmiI GGNNCC 2 cut(s) 549, 804
BmrFI CCNGG 2 cut(s) 347, 540
BmsI GCATC 2 cut(s) 216, 491
BmtI GCTAGC 1 cut(s) 737
BpiI GAAGAC 1 cut(s) 551
BpmI CTGGAG 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 681
BpuEI CTTGAG 2 cut(s) 911, 1064
BpuMI CCSGG 2 cut(s) 347, 540
BsaAI YACGTR 1 cut(s) 468
BsaHI GRCGYC 2 cut(s) 603, 776
BsaI GGTCTC 1 cut(s) 785
BsaJI CCNNGG 3 cut(s) 314, 364, 606
BsaWI WCCGGW 3 cut(s) 799, 891, 1004
BsaXI ACNNNNNCTCC 4 cut(s) 310, 340, 842, 872
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 573
Bse118I RCCGGY 1 cut(s) 891
Bse1I ACTGG 2 cut(s) 426, 795
Bse3DI GCAATG 1 cut(s) 728
BseDI CCNNGG 3 cut(s) 314, 364, 606
BseGI GGATG 2 cut(s) 416, 482
BseLI CCNNNNNNNGG 2 cut(s) 365, 573
BseMI GCAATG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 514, 948
BseNI ACTGG 2 cut(s) 426, 795
BseRI GAGGAG 4 cut(s) 390, 459, 863, 1122
BseXI GCAGC 6 cut(s) 322, 629, 672, 702, 1048, 1051
BseYI CCCAGC 2 cut(s) 571, 701
Bsh1236I CGCG 2 cut(s) 839, 981
Bsh1285I CGRYCG 3 cut(s) 265, 810, 896
BshFI GGCC 2 cut(s) 350, 641
BshNI GGYRCC 1 cut(s) 802
BshTI ACCGGT 1 cut(s) 891
BsiEI CGRYCG 3 cut(s) 265, 810, 896
BsiHKAI GWGCWC 1 cut(s) 451
BsiSI CCGG 5 cut(s) 347, 540, 800, 892, 1005
BsiWI CGTACG 1 cut(s) 468
BslFI GGGAC 2 cut(s) 380, 383
BslI CCNNNNNNNGG 2 cut(s) 365, 573
BsmAI GTCTC 2 cut(s) 785, 1104
BsmBI CGTCTC 1 cut(s) 1104
BsmFI GGGAC 2 cut(s) 380, 383
BsnI GGCC 2 cut(s) 350, 641
Bso31I GGTCTC 1 cut(s) 785
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 8 cut(s) 139, 286, 330, 487, 825, 898, 910, 960
Bsp1720I GCTNAGC 1 cut(s) 681
Bsp19I CCATGG 1 cut(s) 314
BspACI CCGC 3 cut(s) 1085, 1101, 1104
BspANI GGCC 2 cut(s) 350, 641
BspCNI CTCAG 2 cut(s) 513, 949
BspFNI CGCG 2 cut(s) 839, 981
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 549, 804
BspMAI CTGCAG 1 cut(s) 312
BspOI GCTAGC 1 cut(s) 737
BspPI GGATC 2 cut(s) 325, 906
BspQI GCTCTTC 2 cut(s) 1026, 1091
BspT107I GGYRCC 1 cut(s) 802
BspTNI GGTCTC 1 cut(s) 785
BsrBI CCGCTC 1 cut(s) 1101
BsrDI GCAATG 1 cut(s) 728
BsrFI RCCGGY 1 cut(s) 891
BsrI ACTGG 2 cut(s) 426, 795
BssAI RCCGGY 1 cut(s) 891
BssECI CCNNGG 3 cut(s) 314, 364, 606
BssMI GATC 8 cut(s) 139, 286, 330, 487, 825, 898, 910, 960
BssNI GRCGYC 2 cut(s) 603, 776
BssT1I CCWWGG 2 cut(s) 314, 606
Bst4CI ACNGT 4 cut(s) 263, 462, 476, 1055
Bst6I CTCTTC 4 cut(s) 436, 649, 1026, 1091
BstACI GRCGYC 2 cut(s) 603, 776
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 3 cut(s) 500, 681, 957
BstDSI CCRYGG 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 416, 482
BstFNI CGCG 2 cut(s) 839, 981
BstH2I RGCGCY 2 cut(s) 521, 1079
BstHHI GCGC 3 cut(s) 520, 690, 1078
BstKTI GATC 8 cut(s) 142, 289, 333, 490, 828, 901, 913, 963
BstMAI GTCTC 2 cut(s) 785, 1104
BstMBI GATC 8 cut(s) 139, 286, 330, 487, 825, 898, 910, 960
BstMCI CGRYCG 3 cut(s) 265, 810, 896
BstMWI GCNNNNNNNGC 5 cut(s) 577, 617, 769, 1045, 1082
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 2 cut(s) 345, 538
BstSFI CTRYAG 2 cut(s) 308, 458
BstUI CGCG 2 cut(s) 839, 981
BstV1I GCAGC 6 cut(s) 322, 629, 672, 702, 1048, 1051
BstV2I GAAGAC 1 cut(s) 551
BstX2I RGATCY 1 cut(s) 898
BstYI RGATCY 1 cut(s) 898
BsuRI GGCC 2 cut(s) 350, 641
BtgI CCRYGG 1 cut(s) 314
BtsCI GGATG 2 cut(s) 416, 482
BtsI GCAGTG 1 cut(s) 1138
BtsIMutI CAGTG 1 cut(s) 1138
Cac8I GCNNGC 1 cut(s) 735
CciI TCATGA 1 cut(s) 283
CfoI GCGC 3 cut(s) 520, 690, 1078
Cfr10I RCCGGY 1 cut(s) 891
Cfr13I GGNCC 4 cut(s) 349, 524, 532, 889
CseI GACGC 4 cut(s) 611, 828, 845, 987
Csp6I GTAC 5 cut(s) 21, 64, 259, 469, 1051
CspAI ACCGGT 1 cut(s) 891
CviAII CATG 4 cut(s) 284, 315, 598, 752
CviQI GTAC 5 cut(s) 21, 64, 259, 469, 1051
DdeI CTNAG 3 cut(s) 500, 681, 957
DpnI GATC 8 cut(s) 141, 288, 332, 489, 827, 900, 912, 962
DpnII GATC 8 cut(s) 139, 286, 330, 487, 825, 898, 910, 960
DriI GACNNNNNGTC 2 cut(s) 530, 838
Eam1104I CTCTTC 4 cut(s) 436, 649, 1026, 1091
Eam1105I GACNNNNNGTC 2 cut(s) 530, 838
EarI CTCTTC 4 cut(s) 436, 649, 1026, 1091
EciI GGCGGA 1 cut(s) 1119
Ecl136II GAGCTC 1 cut(s) 449
Eco130I CCWWGG 2 cut(s) 314, 606
Eco24I GRGCYC 1 cut(s) 451
Eco31I GGTCTC 1 cut(s) 785
Eco47I GGWCC 3 cut(s) 524, 532, 889
Eco47III AGCGCT 1 cut(s) 1077
Eco53kI GAGCTC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 1110
EcoICRI GAGCTC 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 524
EcoT14I CCWWGG 2 cut(s) 314, 606
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 2 cut(s) 314, 606
Esp3I CGTCTC 1 cut(s) 1104
FaeI CATG 4 cut(s) 287, 318, 601, 755
FaiI YATR 9 cut(s) 104, 106, 285, 316, 423, 530, 599, 753, 1058
FaqI GGGAC 2 cut(s) 380, 383
FatI CATG 4 cut(s) 283, 314, 597, 751
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 7 cut(s) 311, 618, 686, 691, 1037, 1040, 1102
FokI GGATG 2 cut(s) 403, 469
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 7 cut(s) 311, 618, 686, 691, 1037, 1040, 1102
FspBI CTAG 3 cut(s) 392, 521, 734
FspI TGCGCA 1 cut(s) 689
GlaI GCGC 3 cut(s) 519, 689, 1077
GluI GCNGC 7 cut(s) 311, 618, 686, 691, 1037, 1040, 1102
GsaI CCCAGC 2 cut(s) 575, 705
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 2 cut(s) 521, 1079
HaeIII GGCC 2 cut(s) 350, 641
HapII CCGG 5 cut(s) 347, 540, 800, 892, 1005
HgaI GACGC 4 cut(s) 611, 828, 845, 987
HhaI GCGC 3 cut(s) 520, 690, 1078
Hin1I GRCGYC 2 cut(s) 603, 776
Hin1II CATG 4 cut(s) 287, 318, 601, 755
Hin6I GCGC 3 cut(s) 518, 688, 1076
HinP1I GCGC 3 cut(s) 518, 688, 1076
HinfI GANTC 4 cut(s) 160, 319, 1016, 1115
HpaII CCGG 5 cut(s) 347, 540, 800, 892, 1005
HphI GGTGA 3 cut(s) 485, 994, 1099
Hpy166II GTNNAC 4 cut(s) 155, 465, 832, 977
Hpy188I TCNGA 7 cut(s) 330, 365, 487, 503, 514, 844, 898
Hpy188III TCNNGA 3 cut(s) 191, 284, 919
Hpy8I GTNNAC 4 cut(s) 155, 465, 832, 977
Hpy99I CGWCG 3 cut(s) 476, 839, 844
HpyAV CCTTC 1 cut(s) 751
HpyCH4III ACNGT 4 cut(s) 263, 462, 476, 1055
HpyCH4IV ACGT 4 cut(s) 467, 776, 937, 968
HpyCH4V TGCA 2 cut(s) 229, 310
HpyF10VI GCNNNNNNNGC 5 cut(s) 577, 617, 769, 1045, 1082
HpyF3I CTNAG 3 cut(s) 500, 681, 957
HpySE526I ACGT 4 cut(s) 467, 776, 937, 968
Hsp92I GRCGYC 2 cut(s) 603, 776
Hsp92II CATG 4 cut(s) 287, 318, 601, 755
HspAI GCGC 3 cut(s) 518, 688, 1076
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 8 cut(s) 139, 286, 330, 487, 825, 898, 910, 960
LguI GCTCTTC 2 cut(s) 1026, 1091
LmnI GCTCC 6 cut(s) 298, 412, 446, 454, 553, 760
Lsp1109I GCAGC 6 cut(s) 322, 629, 672, 702, 1048, 1051
LweI GCATC 2 cut(s) 216, 491
MaeI CTAG 3 cut(s) 392, 521, 734
MaeII ACGT 4 cut(s) 467, 776, 937, 968
MaeIII GTNAC 1 cut(s) 629
MalI GATC 8 cut(s) 141, 288, 332, 489, 827, 900, 912, 962
MbiI CCGCTC 1 cut(s) 1101
MboI GATC 8 cut(s) 139, 286, 330, 487, 825, 898, 910, 960
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 2 cut(s) 504, 1120
MluI ACGCGT 2 cut(s) 837, 979
MlyI GAGTC 3 cut(s) 169, 313, 1109
MmeI TCCRAC 3 cut(s) 232, 822, 876
MseI TTAA 1 cut(s) 1137
MspI CCGG 5 cut(s) 347, 540, 800, 892, 1005
MspR9I CCNGG 2 cut(s) 347, 540
MvnI CGCG 2 cut(s) 839, 981
MwoI GCNNNNNNNGC 5 cut(s) 577, 617, 769, 1045, 1082
NciI CCSGG 2 cut(s) 347, 540
NcoI CCATGG 1 cut(s) 314
NdeII GATC 8 cut(s) 139, 286, 330, 487, 825, 898, 910, 960
NheI GCTAGC 1 cut(s) 733
NlaIII CATG 4 cut(s) 287, 318, 601, 755
NlaIV GGNNCC 2 cut(s) 549, 804
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 1 cut(s) 629
NsbI TGCGCA 1 cut(s) 689
NspI RCATGY 1 cut(s) 755
PagI TCATGA 1 cut(s) 283
PciI ACATGT 1 cut(s) 751
PciSI GCTCTTC 2 cut(s) 1026, 1091
PcsI WCGNNNNNNNCGW 2 cut(s) 825, 843
PfeI GAWTC 1 cut(s) 1016
Pfl23II CGTACG 1 cut(s) 468
PinAI ACCGGT 1 cut(s) 891
PkrI GCNGC 7 cut(s) 312, 619, 687, 692, 1038, 1041, 1103
PleI GAGTC 3 cut(s) 168, 313, 1109
PpsI GAGTC 3 cut(s) 168, 313, 1109
Ppu21I YACGTR 1 cut(s) 468
PpuMI RGGWCCY 1 cut(s) 524
PscI ACATGT 1 cut(s) 751
Psp124BI GAGCTC 1 cut(s) 451
Psp1406I AACGTT 1 cut(s) 968
Psp5II RGGWCCY 1 cut(s) 524
PspFI CCCAGC 2 cut(s) 571, 701
PspLI CGTACG 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 549, 804
PspPI GGNCC 4 cut(s) 349, 524, 532, 889
PspPPI RGGWCCY 1 cut(s) 524
PstI CTGCAG 1 cut(s) 312
PsuI RGATCY 1 cut(s) 898
RsaI GTAC 5 cut(s) 22, 65, 260, 470, 1052
RsaNI GTAC 5 cut(s) 21, 64, 259, 469, 1051
SacI GAGCTC 1 cut(s) 451
SapI GCTCTTC 2 cut(s) 1026, 1091
SaqAI TTAA 1 cut(s) 1137
SatI GCNGC 7 cut(s) 311, 618, 686, 691, 1037, 1040, 1102
Sau3AI GATC 8 cut(s) 139, 286, 330, 487, 825, 898, 910, 960
Sau96I GGNCC 4 cut(s) 349, 524, 532, 889
ScaI AGTACT 1 cut(s) 1052
SchI GAGTC 3 cut(s) 169, 313, 1109
ScrFI CCNGG 2 cut(s) 347, 540
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 2 cut(s) 216, 491
SfcI CTRYAG 2 cut(s) 308, 458
SinI GGWCC 3 cut(s) 524, 532, 889
SmlI CTYRAG 2 cut(s) 926, 1079
SmoI CTYRAG 2 cut(s) 926, 1079
Sse9I AATT 2 cut(s) 504, 1120
SsiI CCGC 3 cut(s) 1085, 1101, 1104
SspI AATATT 1 cut(s) 10
SspMI CTAG 3 cut(s) 392, 521, 734
SstI GAGCTC 1 cut(s) 451
StyD4I CCNGG 2 cut(s) 345, 538
StyI CCWWGG 2 cut(s) 314, 606
TaaI ACNGT 4 cut(s) 263, 462, 476, 1055
TaiI ACGT 4 cut(s) 470, 779, 940, 971
TaqI TCGA 3 cut(s) 265, 381, 1064
TaqII GACCGA 2 cut(s) 545, 824
TasI AATT 2 cut(s) 504, 1120
TatI WGTACW 2 cut(s) 63, 1050
TauI GCSGC 1 cut(s) 1104
TfiI GAWTC 1 cut(s) 1016
Tru1I TTAA 1 cut(s) 1137
Tru9I TTAA 1 cut(s) 1137
TscAI CASTG 1 cut(s) 1138
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 6 cut(s) 310, 617, 685, 690, 1036, 1039
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 3 cut(s) 20, 91, 988
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 1 cut(s) 1138
VpaK11BI GGWCC 3 cut(s) 524, 532, 889
XagI CCTNNNNNAGG 1 cut(s) 363
XapI RAATTY 1 cut(s) 504
XceI RCATGY 1 cut(s) 755
XspI CTAG 3 cut(s) 392, 521, 734
ZraI GACGTC 1 cut(s) 777
ZrmI AGTACT 1 cut(s) 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.