Prupe.1G304900_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012088
Physical Location & Seq
Forward (+)
29856388 .. 29859711
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G304900.1

Sequence Viewer

Length: 1077 bp
ATGATGTGTGGGAAGAAAGAAGATCAAGGGGAGTGTTCTCAGTCTGTCCAAAACCTACAAGCCTTCCAAGAACACTTGTTTCTCCAACAACAACATCAGATGCAACAACAACAACAACATCAGATGCAACAACAACATCATCAACAACAAGGTATGATTTTCCCTCATGATCATCAAGCCCCGCCGCCAATCTTGCAGCCATGGACTCTCCCTCCGATCCACTCCTTCAACCCATCAGCCCACGACCAGTTTCTTCCAACTCCTCCTCCTCCAATTCCATCGTCATCATCCTACGCTAGTTTCTTCAACCGAAGAGCTCCTCTCCAGTTCACATATGACGGTTCAGCATCTGAACACCATCACCATCTCAGAATCTTATCCGAGACACTTGGACCCATGGTTCAACCCGGTTCCGCCCCGTTTGGGCTTCAAGCAGAGTTGGGTAAGTTGACCGCCCAAGAAATCATGGACGCCAAGGCTCTCGCAGCTTCTAAGAGTCATAGCGAGGCCGAGCGGAGACGAAGAGAGAGAATCAATAACCATCTCGCCAAGTTGCGCAGCTTATTGCCCAGCACCACCAAAACGGACAAAGCTTCCTTACTAGCAGAAGTAATACAACATGTGAAAGAGCTGAAACGGCAGACTTCTTTGATCGCGGAGACAAGTCCGGTGCCGACCGAAATGGACGAGCTAATCGTCGACGATGCGTCGGACGAGGACGGCAAGTTTGTGATAAAAGCCTCGCTGTGCTGCGAAGACCGTTCAGATCTCTTGCCCGACCTCATCAAGACACTGAAGGCCTTGCGCTTGAGAACACTGAAAGCTGAGATCACAACGCTGGGGGGACGTGTGAAGAACGTGCTGTTCATCACCGGAGAAGAAGACTCGAGCAGCAGCGGAGGGGAGCAAGAGCAGCAGCATCAAGTGCCGCATGAGCATCAGCAGCAGCAATATTGTATCAGTTCGATTGAAGAAGCGCTTAAGGCTGTGATGGAGAAGACAGGTGGGGAACATGAGCAGTCTTCTTCTGGGAGTGTTAAGAGGCAAAGGACTAATAACATCAATATCCTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

359

Amino Acids

40.17

Weight (kDa)

6.2

Isoelectric Point (pI)

68.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68810
fragaria_vesca FvH4_4g28130 FvH4_4g28130
malus_domestica MD13G1047100.v1.1 MD16G1048700.v1.1
prunus_persica Prupe.1G304900_v2.0.a1
pyrus_communis pycom13g04120 pycom16g04260
rosa_chinensis RchiOBHm_Chr4g0435901
rosa_laevigata RLG00000006551
rosa_multiflora Rmu_sc0003165.1_g000008
rosa_roxburghii Rroxscaffold_5G00377070
rosa_rugosa Rorug04G0290700 Rorug04G0290700
rosa_samantha Rh4AG344900 Rh4BG353700 Rh4CG368100 Rh4DG347500
rosa_wichuraiana Rw4G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 670
AccBSI CCGCTC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 699
AccII CGCG 1 cut(s) 656
AciI CCGC 8 cut(s) 182, 185, 414, 453, 514, 656, 897, 929
AclWI GGATC 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 815
AcyI GRCGYC 1 cut(s) 471
AfeI AGCGCT 1 cut(s) 978
AfiI CCNNNNNNNGG 1 cut(s) 423
AflII CTTAAG 1 cut(s) 980
AflIII ACRYGT 2 cut(s) 619, 847
AgsI TTSAA 5 cut(s) 229, 307, 404, 431, 971
AhdI GACNNNNNGTC 1 cut(s) 706
AjiI CACGTC 1 cut(s) 848
AloI GAACNNNNNNTCC 2 cut(s) 384, 416
AluBI AGCT 7 cut(s) 317, 488, 561, 593, 631, 691, 824
AluI AGCT 7 cut(s) 317, 488, 561, 593, 631, 691, 824
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 3 cut(s) 377, 511, 653
AlwI GGATC 1 cut(s) 211
AlwNI CAGNNNCTG 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 886
Aor51HI AGCGCT 1 cut(s) 978
AoxI GGCC 2 cut(s) 507, 798
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
AspLEI GCGC 3 cut(s) 558, 807, 979
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 353, 862
AvaI CYCGRG 1 cut(s) 886
AvaII GGWCC 1 cut(s) 392
BanI GGYRCC 1 cut(s) 670
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 4 cut(s) 762, 888, 1004, 1014
Bbv12I GWGCWC 1 cut(s) 319
BccI CCATC 6 cut(s) 241, 286, 366, 372, 549, 985
BceAI ACGGC 2 cut(s) 653, 736
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 3 cut(s) 377, 511, 653
BfaI CTAG 2 cut(s) 297, 602
BfoI RGCGCY 1 cut(s) 980
BfrI CTTAAG 1 cut(s) 980
BglII AGATCT 1 cut(s) 766
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 1 cut(s) 392
BmeRI GACNNNNNGTC 1 cut(s) 706
BmeT110I CYCGRG 1 cut(s) 886
BmgBI CACGTC 1 cut(s) 848
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 3 cut(s) 394, 412, 672
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 6 cut(s) 90, 114, 356, 694, 928, 946
BpiI GAAGAC 4 cut(s) 762, 888, 1004, 1014
BplI GAGNNNNNCTC 2 cut(s) 306, 338
BpmI CTGGAG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 829
BpuMI CCSGG 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 3 cut(s) 200, 396, 474
BsaWI WCCGGW 2 cut(s) 667, 872
BsaXI ACNNNNNCTCC 4 cut(s) 196, 226, 250, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse1I ACTGG 2 cut(s) 247, 325
BseDI CCNNGG 3 cut(s) 200, 396, 474
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 53, 382, 816
BseNI ACTGG 2 cut(s) 247, 325
BseRI GAGGAG 4 cut(s) 252, 255, 258, 309
BseYI CCCAGC 2 cut(s) 569, 838
Bsh1236I CGCG 1 cut(s) 656
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 2 cut(s) 509, 800
BshNI GGYRCC 1 cut(s) 670
BsiEI CGRYCG 1 cut(s) 678
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 1 cut(s) 886
BsiSI CCGG 3 cut(s) 408, 668, 873
BslFI GGGAC 1 cut(s) 858
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 3 cut(s) 377, 511, 653
BsmBI CGTCTC 1 cut(s) 511
BsmFI GGGAC 1 cut(s) 858
BsnI GGCC 2 cut(s) 509, 800
BsoBI CYCGRG 1 cut(s) 886
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 6 cut(s) 22, 169, 216, 651, 766, 828
Bsp19I CCATGG 2 cut(s) 200, 396
BspACI CCGC 8 cut(s) 182, 185, 414, 453, 514, 656, 897, 929
BspANI GGCC 2 cut(s) 509, 800
BspCNI CTCAG 3 cut(s) 52, 381, 817
BspFNI CGCG 1 cut(s) 656
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 3 cut(s) 394, 412, 672
BspPI GGATC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 670
BspTI CTTAAG 1 cut(s) 980
BsrBI CCGCTC 1 cut(s) 514
BsrI ACTGG 2 cut(s) 247, 325
BssECI CCNNGG 3 cut(s) 200, 396, 474
BssMI GATC 6 cut(s) 22, 169, 216, 651, 766, 828
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 3 cut(s) 200, 396, 474
Bst4CI ACNGT 2 cut(s) 341, 761
Bst6I CTCTTC 2 cut(s) 307, 517
BstACI GRCGYC 1 cut(s) 471
BstAFI CTTAAG 1 cut(s) 980
BstAPI GCANNNNNTGC 1 cut(s) 925
BstDEI CTNAG 4 cut(s) 39, 368, 492, 825
BstDSI CCRYGG 2 cut(s) 200, 396
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 656
BstH2I RGCGCY 1 cut(s) 980
BstHHI GCGC 3 cut(s) 558, 807, 979
BstKTI GATC 6 cut(s) 25, 172, 219, 654, 769, 831
BstMAI GTCTC 3 cut(s) 377, 511, 653
BstMBI GATC 6 cut(s) 22, 169, 216, 651, 766, 828
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 8 cut(s) 193, 485, 637, 913, 925, 934, 943, 983
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 406
BstUI CGCG 1 cut(s) 656
BstV2I GAAGAC 4 cut(s) 762, 888, 1004, 1014
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
BsuRI GGCC 2 cut(s) 509, 800
BtgI CCRYGG 2 cut(s) 200, 396
BtrI CACGTC 1 cut(s) 848
BtsCI GGATG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 791, 815
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 1 cut(s) 166
CfoI GCGC 3 cut(s) 558, 807, 979
Cfr13I GGNCC 1 cut(s) 392
CseI GACGC 2 cut(s) 479, 696
CviAII CATG 7 cut(s) 167, 201, 397, 466, 620, 932, 1013
DdeI CTNAG 4 cut(s) 39, 368, 492, 825
DpnI GATC 6 cut(s) 24, 171, 218, 653, 768, 830
DpnII GATC 6 cut(s) 22, 169, 216, 651, 766, 828
DriI GACNNNNNGTC 1 cut(s) 706
Eam1104I CTCTTC 2 cut(s) 307, 517
Eam1105I GACNNNNNGTC 1 cut(s) 706
EarI CTCTTC 2 cut(s) 307, 517
EciI GGCGGA 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 317
Eco130I CCWWGG 3 cut(s) 200, 396, 474
Eco147I AGGCCT 1 cut(s) 800
Eco24I GRGCYC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 392
Eco47III AGCGCT 1 cut(s) 978
Eco53kI GAGCTC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 815
Eco88I CYCGRG 1 cut(s) 886
EcoICRI GAGCTC 1 cut(s) 317
EcoT14I CCWWGG 3 cut(s) 200, 396, 474
EcoT38I GRGCYC 1 cut(s) 319
ErhI CCWWGG 3 cut(s) 200, 396, 474
Esp3I CGTCTC 1 cut(s) 511
FaeI CATG 7 cut(s) 170, 204, 400, 469, 623, 935, 1016
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 1 cut(s) 858
FatI CATG 7 cut(s) 166, 200, 396, 465, 619, 931, 1012
FauI CCCGC 1 cut(s) 189
FauNDI CATATG 1 cut(s) 334
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 699
FokI GGATG 1 cut(s) 274
FriOI GRGCYC 1 cut(s) 319
FspBI CTAG 2 cut(s) 297, 602
FspI TGCGCA 1 cut(s) 557
GlaI GCGC 3 cut(s) 557, 806, 978
GsaI CCCAGC 2 cut(s) 573, 842
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 980
HaeIII GGCC 2 cut(s) 509, 800
HapII CCGG 3 cut(s) 408, 668, 873
HgaI GACGC 2 cut(s) 479, 696
HhaI GCGC 3 cut(s) 558, 807, 979
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 7 cut(s) 170, 204, 400, 469, 623, 935, 1016
Hin6I GCGC 3 cut(s) 556, 805, 977
HinP1I GCGC 3 cut(s) 556, 805, 977
HincII GTYRAC 2 cut(s) 450, 700
HindII GTYRAC 2 cut(s) 450, 700
HindIII AAGCTT 1 cut(s) 591
HinfI GANTC 5 cut(s) 205, 372, 496, 531, 884
HpaII CCGG 3 cut(s) 408, 668, 873
HphI GGTGA 2 cut(s) 353, 862
Hpy166II GTNNAC 3 cut(s) 330, 450, 700
Hpy188I TCNGA 8 cut(s) 99, 123, 216, 352, 371, 382, 712, 766
Hpy188III TCNNGA 2 cut(s) 167, 787
Hpy8I GTNNAC 3 cut(s) 330, 450, 700
Hpy99I CGWCG 3 cut(s) 701, 704, 712
HpyAV CCTTC 3 cut(s) 73, 235, 790
HpyCH4III ACNGT 2 cut(s) 341, 761
HpyCH4IV ACGT 2 cut(s) 847, 858
HpyCH4V TGCA 3 cut(s) 103, 127, 196
HpyF10VI GCNNNNNNNGC 8 cut(s) 193, 485, 637, 913, 925, 934, 943, 983
HpyF3I CTNAG 4 cut(s) 39, 368, 492, 825
HpySE526I ACGT 2 cut(s) 847, 858
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 7 cut(s) 170, 204, 400, 469, 623, 935, 1016
HspAI GCGC 3 cut(s) 556, 805, 977
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 6 cut(s) 22, 169, 216, 651, 766, 828
LguI GCTCTTC 1 cut(s) 307
LmnI GCTCC 2 cut(s) 322, 904
LpnPI CCDG 9 cut(s) 260, 338, 421, 583, 681, 824, 886, 987, 1014
LweI GCATC 6 cut(s) 90, 114, 356, 694, 928, 946
MaeI CTAG 2 cut(s) 297, 602
MaeII ACGT 2 cut(s) 847, 858
MalI GATC 6 cut(s) 24, 171, 218, 653, 768, 830
MbiI CCGCTC 1 cut(s) 514
MboI GATC 6 cut(s) 22, 169, 216, 651, 766, 828
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 1 cut(s) 273
MlyI GAGTC 3 cut(s) 199, 505, 878
MmeI TCCRAC 3 cut(s) 109, 281, 690
MseI TTAA 3 cut(s) 981, 1038, 1071
MspA1I CMGCKG 1 cut(s) 897
MspCI CTTAAG 1 cut(s) 980
MspI CCGG 3 cut(s) 408, 668, 873
MspR9I CCNGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 8 cut(s) 193, 485, 637, 913, 925, 934, 943, 983
NciI CCSGG 1 cut(s) 408
NcoI CCATGG 2 cut(s) 200, 396
NdeI CATATG 1 cut(s) 334
NdeII GATC 6 cut(s) 22, 169, 216, 651, 766, 828
NlaIII CATG 7 cut(s) 170, 204, 400, 469, 623, 935, 1016
NlaIV GGNNCC 3 cut(s) 394, 412, 672
NmeAIII GCCGAG 1 cut(s) 535
NsbI TGCGCA 1 cut(s) 557
NspI RCATGY 1 cut(s) 623
PaeR7I CTCGAG 1 cut(s) 886
PagI TCATGA 1 cut(s) 166
PceI AGGCCT 1 cut(s) 800
PciI ACATGT 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 693
PfeI GAWTC 2 cut(s) 372, 531
PleI GAGTC 3 cut(s) 199, 504, 878
PpsI GAGTC 3 cut(s) 199, 504, 878
PscI ACATGT 1 cut(s) 619
Psp124BI GAGCTC 1 cut(s) 319
PspFI CCCAGC 2 cut(s) 569, 838
PspN4I GGNNCC 3 cut(s) 394, 412, 672
PspPI GGNCC 1 cut(s) 392
PspXI VCTCGAGB 1 cut(s) 886
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 766
SacI GAGCTC 1 cut(s) 319
SalI GTCGAC 1 cut(s) 698
SapI GCTCTTC 1 cut(s) 307
SaqAI TTAA 3 cut(s) 981, 1038, 1071
Sau3AI GATC 6 cut(s) 22, 169, 216, 651, 766, 828
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 3 cut(s) 199, 505, 878
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 319
SfaNI GCATC 6 cut(s) 90, 114, 356, 694, 928, 946
Sfr274I CTCGAG 1 cut(s) 886
SgrDI CGTCGACG 1 cut(s) 698
SinI GGWCC 1 cut(s) 392
SlaI CTCGAG 1 cut(s) 886
SmlI CTYRAG 3 cut(s) 808, 886, 980
SmoI CTYRAG 3 cut(s) 808, 886, 980
Sse9I AATT 1 cut(s) 273
SseBI AGGCCT 1 cut(s) 800
SsiI CCGC 8 cut(s) 182, 185, 414, 453, 514, 656, 897, 929
SspI AATATT 1 cut(s) 953
SspMI CTAG 2 cut(s) 297, 602
SstI GAGCTC 1 cut(s) 319
StuI AGGCCT 1 cut(s) 800
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 3 cut(s) 200, 396, 474
TaaI ACNGT 2 cut(s) 341, 761
TaiI ACGT 2 cut(s) 850, 861
TaqI TCGA 3 cut(s) 699, 887, 965
TaqII GACCGA 1 cut(s) 692
TasI AATT 1 cut(s) 273
TauI GCSGC 2 cut(s) 187, 931
TfiI GAWTC 2 cut(s) 372, 531
Tru1I TTAA 3 cut(s) 981, 1038, 1071
Tru9I TTAA 3 cut(s) 981, 1038, 1071
TscAI CASTG 2 cut(s) 798, 822
TspDTI ATGAA 1 cut(s) 856
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 2 cut(s) 798, 822
Vha464I CTTAAG 1 cut(s) 980
VpaK11BI GGWCC 1 cut(s) 392
XceI RCATGY 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 886
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 2 cut(s) 297, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.