pycom16g04260

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012088
Physical Location & Seq
Reverse (-)
2664974 .. 2667018
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04260.1

Sequence Viewer

Length: 1056 bp
ATGATGTGTGGGAAGGAAGAAGATCAAGGGGAGTGCTCTCAGTCAGTCCAAAACCTACAAGCTTTTCAAGAACACTTGTTTCTCCAACAACAACAGCATCATCAGATGCAACAGCACCAACAAGGTGGTTTGATTTTTCCACATGATCATCAACCTCCTCCTCCAACTCCAATCTTGCAGCCATGGACTCTCCCACCGATCTACAACCCAACCGCCCACGATCCTTTTCTCCTCCCAACTCCTCCCCAAATTCCGTCGTCATCATCCTACGCTTCTTTCTTCAACCGAAGACCTCCTTCTCTCCAGTTCACATACGACGGTTCAGCGTCTGACCACCACCACCACCACCACCTCAGAATCTTGTCTGAGACGCTTGGACCGATGGTTCAACCGGGTTCGGGCGCTTTCGGTCTTCAGGCCGAATTAGGTAAGTTGACTGCCCAAGAAATCATGGACGCCAAGGCACTCGCCGCTTCTAAGAGTCACAGCGAGGCTGAGAGGAGACGAAGAGAGAGAATCAACAATCATCTCGCCAAGTTGCGCAGCTTATTGCCCAGCACCACCAAAACGGACAAAGCGTCATTGCTAGCAGAAGTGATACAACACGTGAAAGAGCTGAAACGCCAAACTTCCCTGATCGCTGAGACGAGTCCAGTACCGACCGAAACCGACGAACTACTATTAGACGATGCATCGGACGAGGATGGTAAGTTTGTGATAAAGGCCTCGCTTTGCTGTGAGGACCGGTCGGATCTCCTGCCTGACCTAATCAAGACTTTGAAATCCTTGCGCTTGAGAACGCTCAAAGCCGAGATCACCACACTCGGCGGACGTGTGAAGAACGTGTTGTTCATCACCGGAGAAGAAGACTGGAGTAGTAGCGGGGGAGAGCAAGTACAAATGCAGCATCAACAGTATTGTAAAAGTTCGATTCAAGAAGCGCTGAAGGCTGTCATGGAGAAGACCGGCTGCGGCGATCAGGATCAATCTTCCACAGGGAGTGCTAAGAGACAAAGGACTAATAACATCAATATCCTTGAACACAGGTCCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

352

Amino Acids

39.22

Weight (kDa)

6.31

Isoelectric Point (pI)

62.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 160 - 207 8.5e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68810
fragaria_vesca FvH4_4g28130 FvH4_4g28130
malus_domestica MD13G1047100.v1.1 MD16G1048700.v1.1
prunus_persica Prupe.1G304900_v2.0.a1
pyrus_communis pycom13g04120 pycom16g04260
rosa_chinensis RchiOBHm_Chr4g0435901
rosa_laevigata RLG00000006551
rosa_multiflora Rmu_sc0003165.1_g000008
rosa_roxburghii Rroxscaffold_5G00377070
rosa_rugosa Rorug04G0290700 Rorug04G0290700
rosa_samantha Rh4AG344900 Rh4BG353700 Rh4CG368100 Rh4DG347500
rosa_wichuraiana Rw4G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 542
AciI CCGC 5 cut(s) 213, 471, 828, 882, 972
AclWI GGATC 3 cut(s) 215, 759, 990
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 398, 965
AcvI CACGTG 1 cut(s) 607
AcyI GRCGYC 1 cut(s) 456
AfaI GTAC 2 cut(s) 657, 897
AfeI AGCGCT 1 cut(s) 942
AfiI CCNNNNNNNGG 1 cut(s) 398
AflIII ACRYGT 3 cut(s) 604, 832, 843
AgeI ACCGGT 1 cut(s) 744
AgsI TTSAA 6 cut(s) 68, 283, 389, 781, 935, 1040
AhdI GACNNNNNGTC 1 cut(s) 577
AjiI CACGTC 1 cut(s) 833
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
AluBI AGCT 3 cut(s) 62, 546, 616
AluI AGCT 3 cut(s) 62, 546, 616
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 4 cut(s) 362, 496, 638, 1003
AlwI GGATC 3 cut(s) 215, 759, 990
AlwNI CAGNNNCTG 1 cut(s) 329
Aor51HI AGCGCT 1 cut(s) 942
AoxI GGCC 2 cut(s) 417, 723
ApeKI GCWGC 4 cut(s) 178, 543, 904, 969
ApoI RAATTY 1 cut(s) 249
AsiGI ACCGGT 1 cut(s) 744
AspLEI GCGC 4 cut(s) 404, 543, 792, 943
AspS9I GGNCC 3 cut(s) 377, 742, 1047
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 808, 847
AsuNHI GCTAGC 1 cut(s) 586
AvaII GGWCC 3 cut(s) 377, 742, 1047
BbrPI CACGTG 1 cut(s) 607
BbsI GAAGAC 4 cut(s) 295, 404, 873, 968
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 4 cut(s) 190, 555, 916, 956
BccI CCATC 2 cut(s) 376, 698
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 4 cut(s) 362, 496, 638, 1003
BfaI CTAG 1 cut(s) 587
BfoI RGCGCY 2 cut(s) 405, 944
BisI GCNGC 6 cut(s) 179, 471, 544, 905, 970, 973
BlsI GCNGC 6 cut(s) 180, 472, 545, 906, 971, 974
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 3 cut(s) 377, 742, 1047
BmeRI GACNNNNNGTC 1 cut(s) 577
BmgBI CACGTC 1 cut(s) 833
BmgT120I GGNCC 3 cut(s) 377, 742, 1047
BmiI GGNNCC 1 cut(s) 1049
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 5 cut(s) 96, 106, 679, 701, 916
BmtI GCTAGC 1 cut(s) 590
BpiI GAAGAC 4 cut(s) 295, 404, 873, 968
BpmI CTGGAG 2 cut(s) 287, 892
BpuEI CTTGAG 1 cut(s) 814
BpuMI CCSGG 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 981
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 182, 459
BsaWI WCCGGW 2 cut(s) 744, 857
BsaXI ACNNNNNCTCC 2 cut(s) 879, 909
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse118I RCCGGY 2 cut(s) 744, 965
Bse1I ACTGG 3 cut(s) 304, 653, 875
Bse3DI GCAATG 1 cut(s) 581
Bse8I GATNNNNATC 1 cut(s) 981
BseDI CCNNGG 2 cut(s) 182, 459
BseGI GGATG 2 cut(s) 263, 709
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 1 cut(s) 581
BseMII CTCAG 5 cut(s) 53, 357, 367, 486, 633
BseNI ACTGG 3 cut(s) 304, 653, 875
BseRI GAGGAG 5 cut(s) 147, 150, 221, 231, 514
BseXI GCAGC 4 cut(s) 190, 555, 916, 956
BseYI CCCAGC 1 cut(s) 554
Bsh1285I CGRYCG 2 cut(s) 663, 749
BshFI GGCC 2 cut(s) 419, 725
BshTI ACCGGT 1 cut(s) 744
BsiEI CGRYCG 2 cut(s) 663, 749
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 4 cut(s) 392, 745, 858, 966
BslFI GGGAC 1 cut(s) 1033
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 4 cut(s) 362, 496, 638, 1003
BsmBI CGTCTC 3 cut(s) 362, 496, 638
BsmFI GGGAC 1 cut(s) 1033
BsnI GGCC 2 cut(s) 419, 725
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 9 cut(s) 22, 145, 198, 220, 636, 751, 813, 976, 982
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 5 cut(s) 213, 471, 828, 882, 972
BspANI GGCC 2 cut(s) 419, 725
BspCNI CTCAG 5 cut(s) 52, 358, 366, 487, 634
BspLI GGNNCC 1 cut(s) 1049
BspOI GCTAGC 1 cut(s) 590
BspPI GGATC 3 cut(s) 215, 759, 990
BsrDI GCAATG 1 cut(s) 581
BsrFI RCCGGY 2 cut(s) 744, 965
BsrI ACTGG 3 cut(s) 304, 653, 875
BssAI RCCGGY 2 cut(s) 744, 965
BssECI CCNNGG 2 cut(s) 182, 459
BssMI GATC 9 cut(s) 22, 145, 198, 220, 636, 751, 813, 976, 982
BssNI GRCGYC 1 cut(s) 456
BssT1I CCWWGG 2 cut(s) 182, 459
Bst4CI ACNGT 2 cut(s) 320, 915
Bst6I CTCTTC 1 cut(s) 502
BstACI GRCGYC 1 cut(s) 456
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 7 cut(s) 39, 353, 366, 477, 495, 642, 1005
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 263, 709
BstH2I RGCGCY 2 cut(s) 405, 944
BstHHI GCGC 4 cut(s) 404, 543, 792, 943
BstKTI GATC 9 cut(s) 25, 148, 201, 223, 639, 754, 816, 979, 985
BstMAI GTCTC 4 cut(s) 362, 496, 638, 1003
BstMBI GATC 9 cut(s) 22, 145, 198, 220, 636, 751, 813, 976, 982
BstMCI CGRYCG 2 cut(s) 663, 749
BstMWI GCNNNNNNNGC 2 cut(s) 470, 947
BstSCI CCNGG 1 cut(s) 391
BstV1I GCAGC 4 cut(s) 190, 555, 916, 956
BstV2I GAAGAC 4 cut(s) 295, 404, 873, 968
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 1 cut(s) 125
BstYI RGATCY 1 cut(s) 751
BsuRI GGCC 2 cut(s) 419, 725
BtgI CCRYGG 1 cut(s) 182
BtrI CACGTC 1 cut(s) 833
BtsCI GGATG 2 cut(s) 263, 709
Cac8I GCNNGC 1 cut(s) 588
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 4 cut(s) 404, 543, 792, 943
Cfr10I RCCGGY 2 cut(s) 744, 965
Cfr13I GGNCC 3 cut(s) 377, 742, 1047
CseI GACGC 4 cut(s) 315, 379, 464, 567
Csp6I GTAC 2 cut(s) 656, 896
CspAI ACCGGT 1 cut(s) 744
CviAII CATG 4 cut(s) 143, 183, 451, 955
CviQI GTAC 2 cut(s) 656, 896
DdeI CTNAG 7 cut(s) 39, 353, 366, 477, 495, 642, 1005
DpnI GATC 9 cut(s) 24, 147, 200, 222, 638, 753, 815, 978, 984
DpnII GATC 9 cut(s) 22, 145, 198, 220, 636, 751, 813, 976, 982
DriI GACNNNNNGTC 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 502
Eam1105I GACNNNNNGTC 1 cut(s) 577
EarI CTCTTC 1 cut(s) 502
EciI GGCGGA 1 cut(s) 843
Eco130I CCWWGG 2 cut(s) 182, 459
Eco147I AGGCCT 1 cut(s) 725
Eco47I GGWCC 3 cut(s) 377, 742, 1047
Eco47III AGCGCT 1 cut(s) 942
Eco57I CTGAAG 2 cut(s) 398, 965
Eco72I CACGTG 1 cut(s) 607
EcoO109I RGGNCCY 1 cut(s) 1047
EcoT14I CCWWGG 2 cut(s) 182, 459
EcoT22I ATGCAT 1 cut(s) 694
ErhI CCWWGG 2 cut(s) 182, 459
Esp3I CGTCTC 3 cut(s) 362, 496, 638
FaeI CATG 4 cut(s) 146, 186, 454, 958
FaiI YATR 5 cut(s) 144, 184, 313, 452, 956
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FaqI GGGAC 1 cut(s) 1033
FatI CATG 4 cut(s) 142, 182, 450, 954
FauI CCCGC 1 cut(s) 875
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 6 cut(s) 179, 471, 544, 905, 970, 973
FokI GGATG 2 cut(s) 250, 716
Fsp4HI GCNGC 6 cut(s) 179, 471, 544, 905, 970, 973
FspBI CTAG 1 cut(s) 587
FspI TGCGCA 1 cut(s) 542
GlaI GCGC 4 cut(s) 403, 542, 791, 942
GluI GCNGC 6 cut(s) 179, 471, 544, 905, 970, 973
GsaI CCCAGC 1 cut(s) 558
GsuI CTGGAG 2 cut(s) 287, 892
HaeII RGCGCY 2 cut(s) 405, 944
HaeIII GGCC 2 cut(s) 419, 725
HapII CCGG 4 cut(s) 392, 745, 858, 966
HgaI GACGC 4 cut(s) 315, 379, 464, 567
HhaI GCGC 4 cut(s) 404, 543, 792, 943
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 4 cut(s) 146, 186, 454, 958
Hin6I GCGC 4 cut(s) 402, 541, 790, 941
HinP1I GCGC 4 cut(s) 402, 541, 790, 941
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 6 cut(s) 187, 357, 481, 516, 649, 931
HpaII CCGG 4 cut(s) 392, 745, 858, 966
HphI GGTGA 2 cut(s) 808, 847
Hpy166II GTNNAC 2 cut(s) 309, 435
Hpy188I TCNGA 7 cut(s) 105, 331, 356, 367, 697, 751, 1055
Hpy188III TCNNGA 4 cut(s) 68, 772, 935, 980
Hpy8I GTNNAC 2 cut(s) 309, 435
Hpy99I CGWCG 3 cut(s) 259, 320, 674
HpyAV CCTTC 3 cut(s) 7, 306, 940
HpyCH4III ACNGT 2 cut(s) 320, 915
HpyCH4IV ACGT 3 cut(s) 606, 832, 843
HpyCH4V TGCA 4 cut(s) 109, 178, 692, 904
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 947
HpyF3I CTNAG 7 cut(s) 39, 353, 366, 477, 495, 642, 1005
HpySE526I ACGT 3 cut(s) 606, 832, 843
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 4 cut(s) 146, 186, 454, 958
HspAI GCGC 4 cut(s) 402, 541, 790, 941
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 9 cut(s) 22, 145, 198, 220, 636, 751, 813, 976, 982
Lsp1109I GCAGC 4 cut(s) 190, 555, 916, 956
LweI GCATC 5 cut(s) 96, 106, 679, 701, 916
MaeI CTAG 1 cut(s) 587
MaeII ACGT 3 cut(s) 606, 832, 843
MaeIII GTNAC 1 cut(s) 482
MalI GATC 9 cut(s) 24, 147, 200, 222, 638, 753, 815, 978, 984
MboI GATC 9 cut(s) 22, 145, 198, 220, 636, 751, 813, 976, 982
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 2 cut(s) 249, 422
MlyI GAGTC 3 cut(s) 181, 490, 658
MmeI TCCRAC 3 cut(s) 109, 188, 729
Mph1103I ATGCAT 1 cut(s) 694
MspI CCGG 4 cut(s) 392, 745, 858, 966
MspR9I CCNGG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 470, 947
NciI CCSGG 1 cut(s) 393
NcoI CCATGG 1 cut(s) 182
NdeII GATC 9 cut(s) 22, 145, 198, 220, 636, 751, 813, 976, 982
NheI GCTAGC 1 cut(s) 586
NlaIII CATG 4 cut(s) 146, 186, 454, 958
NlaIV GGNNCC 1 cut(s) 1049
NmeAIII GCCGAG 2 cut(s) 804, 835
NmuCI GTSAC 1 cut(s) 482
NsbI TGCGCA 1 cut(s) 542
NsiI ATGCAT 1 cut(s) 694
PceI AGGCCT 1 cut(s) 725
PcsI WCGNNNNNNNCGW 2 cut(s) 377, 575
PfeI GAWTC 3 cut(s) 357, 516, 931
PinAI ACCGGT 1 cut(s) 744
PkrI GCNGC 6 cut(s) 180, 472, 545, 906, 971, 974
PleI GAGTC 3 cut(s) 181, 489, 657
PmaCI CACGTG 1 cut(s) 607
PmlI CACGTG 1 cut(s) 607
PpsI GAGTC 3 cut(s) 181, 489, 657
Ppu21I YACGTR 1 cut(s) 607
PpuMI RGGWCCY 1 cut(s) 1047
Psp5II RGGWCCY 1 cut(s) 1047
PspCI CACGTG 1 cut(s) 607
PspFI CCCAGC 1 cut(s) 554
PspN4I GGNNCC 1 cut(s) 1049
PspPI GGNCC 3 cut(s) 377, 742, 1047
PspPPI RGGWCCY 1 cut(s) 1047
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 751
RsaI GTAC 2 cut(s) 657, 897
RsaNI GTAC 2 cut(s) 656, 896
SatI GCNGC 6 cut(s) 179, 471, 544, 905, 970, 973
Sau3AI GATC 9 cut(s) 22, 145, 198, 220, 636, 751, 813, 976, 982
Sau96I GGNCC 3 cut(s) 377, 742, 1047
SchI GAGTC 3 cut(s) 181, 490, 658
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 5 cut(s) 96, 106, 679, 701, 916
SinI GGWCC 3 cut(s) 377, 742, 1047
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
Sse9I AATT 2 cut(s) 249, 422
SseBI AGGCCT 1 cut(s) 725
SsiI CCGC 5 cut(s) 213, 471, 828, 882, 972
SspMI CTAG 1 cut(s) 587
StuI AGGCCT 1 cut(s) 725
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 2 cut(s) 182, 459
TaaI ACNGT 2 cut(s) 320, 915
TaiI ACGT 3 cut(s) 609, 835, 846
TaqI TCGA 1 cut(s) 929
TaqII GACCGA 3 cut(s) 394, 398, 677
TasI AATT 2 cut(s) 249, 422
TatI WGTACW 1 cut(s) 895
TauI GCSGC 2 cut(s) 473, 975
TfiI GAWTC 3 cut(s) 357, 516, 931
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 4 cut(s) 178, 543, 904, 969
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 1 cut(s) 841
TspGWI ACGGA 2 cut(s) 243, 584
VpaK11BI GGWCC 3 cut(s) 377, 742, 1047
XapI RAATTY 1 cut(s) 249
XspI CTAG 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.