FvH4_4g28130

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012088
Physical Location & Seq
Reverse (-)
28864471 .. 28867452
2982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28130.t2

Sequence Viewer

Length: 1038 bp
ATGATGTGTGGAAAGAAAGAAGATCAAGGCGAGTGTTCACAGACTCATCATCATCAACAAGTCCAGAACTATCAAGAGCAGCTGCTTCTTCAACAACAACAACAGATGATGCAACAACAACAACAAAACCAGAATGATTTGTACGGTAGTCGAGGTTTGATCTTCCCTCATGATCAACCTCCACCTCCAATCCTGCAGCCATGGACTCTCCCTCAGATCCACGCCTTCAACAACAACATCGACCCATTTCTAGTCCCTCCTCCAGCTCCGTCGTCATCCTACGCCAGCTTCTTCAACAGAAGAGGAGCTCCATCTCTACAGTTCACGTACGACGGTTCAGCATCCGATCACCACCACCTTAGAATCTTATCGGAGGCTCTAGGACCGATGGTCCAGCCTGGTTCGGCTCCTTTCGGTCTCCAAGCCGAGCTGGGGAAGCTGACCGCCCAAGAAATCATGGACGCCAAGGCACTCGCAGCTTCGAAAAGCCACAGCGAGGCCGAAAGAAGAAGAAGAGAGAGAATCAATAACCACCTTGCTAAGCTGCGCAGCCTATTACCCAGCACCACCAAAACGGACAAGGCTTCATTGCTTGCTGAAGTGATACAACATGTGAAGGAGCTGAAACGGCAGACTTCTGTAATAGCGGAGACCAGTCCGGTGCCGACTGAAACAGACGAGCTGGTAGTTGACGATGCCTCAGAAGAGGAGGGCAAGTTCGTAATCAAAGCCTCGTTGTGTTGCGAGGACCGGTCGGATCTTTTGCCTGATCTCATCAAGACACTCAAGGCGTTACGTTTGAGAACGTTGAAAGCTGAGATCACAACGTTAGGTGGACGCGTGAAGAACGTTTTGTTCATCACCGGAGAAGAAGATCATTCGAGCAGCGGCGAAGAGCAACAGCAGTACTGTATAAGCTCGATACAGGAAGCGCTCAAGGCGGTGATGGAGAAGAGCGGCGGAGGCGAAGAGTCTAATTCTTCCGGCAGTGTTAAACGGCAGAGGACTACTAATAATACCAACGTCAGTATCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

346

Amino Acids

38.32

Weight (kDa)

6.08

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 162 - 209 8.3e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68810
fragaria_vesca FvH4_4g28130 FvH4_4g28130
malus_domestica MD13G1047100.v1.1 MD16G1048700.v1.1
prunus_persica Prupe.1G304900_v2.0.a1
pyrus_communis pycom13g04120 pycom16g04260
rosa_chinensis RchiOBHm_Chr4g0435901
rosa_laevigata RLG00000006551
rosa_multiflora Rmu_sc0003165.1_g000008
rosa_roxburghii Rroxscaffold_5G00377070
rosa_rugosa Rorug04G0290700 Rorug04G0290700
rosa_samantha Rh4AG344900 Rh4BG353700 Rh4CG368100 Rh4DG347500
rosa_wichuraiana Rw4G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 661
AccBSI CCGCTC 1 cut(s) 957
AccII CGCG 1 cut(s) 840
AciI CCGC 6 cut(s) 444, 647, 888, 941, 957, 960
AclI AACGTT 3 cut(s) 806, 827, 849
AclWI GGATC 2 cut(s) 211, 765
AcuI CTGAAG 1 cut(s) 618
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 3 cut(s) 143, 329, 908
AfeI AGCGCT 1 cut(s) 933
AfiI CCNNNNNNNGG 2 cut(s) 432, 496
AflIII ACRYGT 2 cut(s) 610, 838
AgeI ACCGGT 1 cut(s) 750
AgsI TTSAA 4 cut(s) 92, 229, 295, 811
AhdI GACNNNNNGTC 1 cut(s) 389
AjnI CCWGG 1 cut(s) 397
AloI GAACNNNNNNTCC 2 cut(s) 701, 733
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 422, 644
AlwI GGATC 2 cut(s) 211, 765
Aor51HI AGCGCT 1 cut(s) 933
AoxI GGCC 1 cut(s) 498
ApeKI GCWGC 7 cut(s) 79, 82, 196, 476, 544, 549, 885
AsiGI ACCGGT 1 cut(s) 750
AspLEI GCGC 2 cut(s) 549, 934
AspS9I GGNCC 3 cut(s) 383, 391, 748
AsuHPI GGTGA 3 cut(s) 341, 853, 955
AsuII TTCGAA 1 cut(s) 482
AvaII GGWCC 3 cut(s) 383, 391, 748
BaeI ACNNNNGTAYC 1 cut(s) 1012
BanI GGYRCC 1 cut(s) 661
BanII GRGCYC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 7 cut(s) 69, 91, 208, 488, 531, 561, 897
BccI CCATC 3 cut(s) 319, 382, 940
BceAI ACGGC 2 cut(s) 644, 1013
BciT130I CCWGG 1 cut(s) 399
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 422, 644
BfaI CTAG 2 cut(s) 251, 380
BfmI CTRYAG 2 cut(s) 194, 317
BfoI RGCGCY 1 cut(s) 935
BisI GCNGC 9 cut(s) 80, 83, 197, 477, 545, 550, 886, 889, 958
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 9 cut(s) 81, 84, 198, 478, 546, 551, 887, 890, 959
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 3 cut(s) 383, 391, 748
BmeRI GACNNNNNGTC 1 cut(s) 389
BmgT120I GGNCC 3 cut(s) 383, 391, 748
BmiI GGNNCC 2 cut(s) 408, 663
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 3 cut(s) 99, 350, 685
BpmI CTGGAG 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 770, 920
BsaAI YACGTR 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 462
BsaI GGTCTC 2 cut(s) 422, 644
BsaJI CCNNGG 2 cut(s) 200, 465
BsaWI WCCGGW 3 cut(s) 658, 750, 863
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bsc4I CCNNNNNNNGG 2 cut(s) 432, 496
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 587
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 200, 465
BseGI GGATG 2 cut(s) 275, 341
BseLI CCNNNNNNNGG 2 cut(s) 432, 496
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 3 cut(s) 227, 714, 807
BseNI ACTGG 1 cut(s) 654
BseRI GAGGAG 3 cut(s) 249, 318, 722
BseXI GCAGC 7 cut(s) 69, 91, 208, 488, 531, 561, 897
BseYI CCCAGC 2 cut(s) 430, 560
Bsh1236I CGCG 1 cut(s) 840
Bsh1285I CGRYCG 1 cut(s) 755
BshFI GGCC 1 cut(s) 500
BshNI GGYRCC 1 cut(s) 661
BshTI ACCGGT 1 cut(s) 750
BsiEI CGRYCG 1 cut(s) 755
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 4 cut(s) 659, 751, 864, 984
BsiWI CGTACG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 432, 496
BsmAI GTCTC 2 cut(s) 422, 644
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 500
Bso31I GGTCTC 2 cut(s) 422, 644
Bsp119I TTCGAA 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 9 cut(s) 22, 159, 172, 216, 346, 757, 769, 819, 874
Bsp1720I GCTNAGC 1 cut(s) 540
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 6 cut(s) 444, 647, 888, 941, 957, 960
BspANI GGCC 1 cut(s) 500
BspCNI CTCAG 3 cut(s) 226, 713, 808
BspFNI CGCG 1 cut(s) 840
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 408, 663
BspMAI CTGCAG 1 cut(s) 198
BspPI GGATC 2 cut(s) 211, 765
BspQI GCTCTTC 2 cut(s) 888, 947
BspT104I TTCGAA 1 cut(s) 482
BspT107I GGYRCC 1 cut(s) 661
BspTNI GGTCTC 2 cut(s) 422, 644
BsrBI CCGCTC 1 cut(s) 957
BsrDI GCAATG 1 cut(s) 587
BsrFI RCCGGY 1 cut(s) 750
BsrI ACTGG 1 cut(s) 654
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 2 cut(s) 200, 465
BssMI GATC 9 cut(s) 22, 159, 172, 216, 346, 757, 769, 819, 874
BssNI GRCGYC 1 cut(s) 462
BssT1I CCWWGG 2 cut(s) 200, 465
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 4 cut(s) 146, 321, 335, 911
Bst6I CTCTTC 6 cut(s) 295, 508, 699, 888, 947, 963
BstACI GRCGYC 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 286, 594
BstDEI CTNAG 5 cut(s) 213, 359, 540, 700, 816
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 275, 341
BstFNI CGCG 1 cut(s) 840
BstH2I RGCGCY 1 cut(s) 935
BstHHI GCGC 2 cut(s) 549, 934
BstKTI GATC 9 cut(s) 25, 162, 175, 219, 349, 760, 772, 822, 877
BstMAI GTCTC 2 cut(s) 422, 644
BstMBI GATC 9 cut(s) 22, 159, 172, 216, 346, 757, 769, 819, 874
BstMCI CGRYCG 1 cut(s) 755
BstMWI GCNNNNNNNGC 5 cut(s) 436, 476, 628, 938, 963
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 2 cut(s) 194, 317
BstUI CGCG 1 cut(s) 840
BstV1I GCAGC 7 cut(s) 69, 91, 208, 488, 531, 561, 897
BstX2I RGATCY 2 cut(s) 216, 757
BstYI RGATCY 2 cut(s) 216, 757
BsuRI GGCC 1 cut(s) 500
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 275, 341
BtsI GCAGTG 1 cut(s) 994
BtsIMutI CAGTG 1 cut(s) 994
Cac8I GCNNGC 2 cut(s) 286, 594
CciI TCATGA 1 cut(s) 169
CfoI GCGC 2 cut(s) 549, 934
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 3 cut(s) 383, 391, 748
CseI GACGC 2 cut(s) 470, 846
Csp6I GTAC 3 cut(s) 142, 328, 907
CspAI ACCGGT 1 cut(s) 750
CviAII CATG 4 cut(s) 170, 201, 457, 611
CviQI GTAC 3 cut(s) 142, 328, 907
DdeI CTNAG 5 cut(s) 213, 359, 540, 700, 816
DpnI GATC 9 cut(s) 24, 161, 174, 218, 348, 759, 771, 821, 876
DpnII GATC 9 cut(s) 22, 159, 172, 216, 346, 757, 769, 819, 874
DriI GACNNNNNGTC 1 cut(s) 389
Eam1104I CTCTTC 6 cut(s) 295, 508, 699, 888, 947, 963
Eam1105I GACNNNNNGTC 1 cut(s) 389
EarI CTCTTC 6 cut(s) 295, 508, 699, 888, 947, 963
EciI GGCGGA 1 cut(s) 975
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 2 cut(s) 200, 465
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 2 cut(s) 422, 644
Eco47I GGWCC 3 cut(s) 383, 391, 748
Eco47III AGCGCT 1 cut(s) 933
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 618
EcoICRI GAGCTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 200, 465
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 200, 465
FaeI CATG 4 cut(s) 173, 204, 460, 614
FaiI YATR 5 cut(s) 171, 202, 458, 612, 914
FaqI GGGAC 1 cut(s) 239
FatI CATG 4 cut(s) 169, 200, 456, 610
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 9 cut(s) 80, 83, 197, 477, 545, 550, 886, 889, 958
FokI GGATG 2 cut(s) 262, 328
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 9 cut(s) 80, 83, 197, 477, 545, 550, 886, 889, 958
FspBI CTAG 2 cut(s) 251, 380
FspI TGCGCA 1 cut(s) 548
GlaI GCGC 2 cut(s) 548, 933
GluI GCNGC 9 cut(s) 80, 83, 197, 477, 545, 550, 886, 889, 958
GsaI CCCAGC 2 cut(s) 434, 564
GsuI CTGGAG 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 935
HaeIII GGCC 1 cut(s) 500
HapII CCGG 4 cut(s) 659, 751, 864, 984
HgaI GACGC 2 cut(s) 470, 846
HhaI GCGC 2 cut(s) 549, 934
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 4 cut(s) 173, 204, 460, 614
Hin6I GCGC 2 cut(s) 547, 932
HinP1I GCGC 2 cut(s) 547, 932
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HinfI GANTC 5 cut(s) 43, 205, 363, 522, 971
HpaII CCGG 4 cut(s) 659, 751, 864, 984
HphI GGTGA 3 cut(s) 341, 853, 955
Hpy166II GTNNAC 4 cut(s) 38, 324, 691, 836
Hpy188I TCNGA 5 cut(s) 216, 346, 373, 703, 757
Hpy188III TCNNGA 4 cut(s) 64, 74, 170, 778
Hpy8I GTNNAC 4 cut(s) 38, 324, 691, 836
Hpy99I CGWCG 2 cut(s) 274, 335
HpyAV CCTTC 2 cut(s) 235, 610
HpyCH4III ACNGT 4 cut(s) 146, 321, 335, 911
HpyCH4IV ACGT 6 cut(s) 326, 796, 806, 827, 849, 1023
HpyCH4V TGCA 2 cut(s) 112, 196
HpyF10VI GCNNNNNNNGC 5 cut(s) 436, 476, 628, 938, 963
HpyF3I CTNAG 5 cut(s) 213, 359, 540, 700, 816
HpySE526I ACGT 6 cut(s) 326, 796, 806, 827, 849, 1023
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 4 cut(s) 173, 204, 460, 614
HspAI GCGC 2 cut(s) 547, 932
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 9 cut(s) 22, 159, 172, 216, 346, 757, 769, 819, 874
LguI GCTCTTC 2 cut(s) 888, 947
LmnI GCTCC 5 cut(s) 271, 305, 313, 412, 619
Lsp1109I GCAGC 7 cut(s) 69, 91, 208, 488, 531, 561, 897
LweI GCATC 3 cut(s) 99, 350, 685
MaeI CTAG 2 cut(s) 251, 380
MaeII ACGT 6 cut(s) 326, 796, 806, 827, 849, 1023
MaeIII GTNAC 1 cut(s) 792
MalI GATC 9 cut(s) 24, 161, 174, 218, 348, 759, 771, 821, 876
MbiI CCGCTC 1 cut(s) 957
MboI GATC 9 cut(s) 22, 159, 172, 216, 346, 757, 769, 819, 874
MflI RGATCY 2 cut(s) 216, 757
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 1 cut(s) 976
MluI ACGCGT 1 cut(s) 838
MlyI GAGTC 3 cut(s) 37, 199, 980
MmeI TCCRAC 1 cut(s) 735
MseI TTAA 1 cut(s) 993
MspA1I CMGCKG 2 cut(s) 82, 888
MspI CCGG 4 cut(s) 659, 751, 864, 984
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 840
MwoI GCNNNNNNNGC 5 cut(s) 436, 476, 628, 938, 963
NcoI CCATGG 1 cut(s) 200
NdeII GATC 9 cut(s) 22, 159, 172, 216, 346, 757, 769, 819, 874
NlaIII CATG 4 cut(s) 173, 204, 460, 614
NlaIV GGNNCC 2 cut(s) 408, 663
NmeAIII GCCGAG 1 cut(s) 451
NsbI TGCGCA 1 cut(s) 548
NspI RCATGY 1 cut(s) 614
NspV TTCGAA 1 cut(s) 482
PagI TCATGA 1 cut(s) 169
PciI ACATGT 1 cut(s) 610
PciSI GCTCTTC 2 cut(s) 888, 947
PfeI GAWTC 2 cut(s) 363, 522
Pfl23II CGTACG 1 cut(s) 327
PinAI ACCGGT 1 cut(s) 750
PkrI GCNGC 9 cut(s) 81, 84, 198, 478, 546, 551, 887, 890, 959
PleI GAGTC 3 cut(s) 37, 199, 979
PpsI GAGTC 3 cut(s) 37, 199, 979
Ppu21I YACGTR 1 cut(s) 327
PscI ACATGT 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 310
Psp1406I AACGTT 3 cut(s) 806, 827, 849
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 2 cut(s) 430, 560
PspGI CCWGG 1 cut(s) 397
PspLI CGTACG 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 408, 663
PspPI GGNCC 3 cut(s) 383, 391, 748
PstI CTGCAG 1 cut(s) 198
PsuI RGATCY 2 cut(s) 216, 757
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 3 cut(s) 143, 329, 908
RsaNI GTAC 3 cut(s) 142, 328, 907
SacI GAGCTC 1 cut(s) 310
SapI GCTCTTC 2 cut(s) 888, 947
SaqAI TTAA 1 cut(s) 993
SatI GCNGC 9 cut(s) 80, 83, 197, 477, 545, 550, 886, 889, 958
Sau3AI GATC 9 cut(s) 22, 159, 172, 216, 346, 757, 769, 819, 874
Sau96I GGNCC 3 cut(s) 383, 391, 748
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 3 cut(s) 37, 199, 980
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 310
SfaNI GCATC 3 cut(s) 99, 350, 685
SfcI CTRYAG 2 cut(s) 194, 317
SfuI TTCGAA 1 cut(s) 482
SinI GGWCC 3 cut(s) 383, 391, 748
SmlI CTYRAG 2 cut(s) 785, 935
SmoI CTYRAG 2 cut(s) 785, 935
Sse9I AATT 1 cut(s) 976
SsiI CCGC 6 cut(s) 444, 647, 888, 941, 957, 960
SspMI CTAG 2 cut(s) 251, 380
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 2 cut(s) 200, 465
TaaI ACNGT 4 cut(s) 146, 321, 335, 911
TaiI ACGT 6 cut(s) 329, 799, 809, 830, 852, 1026
TaqI TCGA 5 cut(s) 151, 240, 482, 881, 920
TaqII GACCGA 2 cut(s) 400, 404
TasI AATT 1 cut(s) 976
TatI WGTACW 1 cut(s) 906
TauI GCSGC 2 cut(s) 891, 960
TfiI GAWTC 2 cut(s) 363, 522
Tru1I TTAA 1 cut(s) 993
Tru9I TTAA 1 cut(s) 993
TscAI CASTG 1 cut(s) 994
TseI GCWGC 7 cut(s) 79, 82, 196, 476, 544, 549, 885
TspDTI ATGAA 2 cut(s) 576, 847
TspGWI ACGGA 2 cut(s) 258, 590
TspRI CASTG 1 cut(s) 994
VpaK11BI GGWCC 3 cut(s) 383, 391, 748
XceI RCATGY 1 cut(s) 614
XspI CTAG 2 cut(s) 251, 380
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.