AT1G69890

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005974
Physical Location & Seq
Reverse (-)
26323086 .. 26324946
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69890.1

Sequence Viewer

Length: 840 bp
ATGGATTTTTTCAATCAAGCTAAAGCCGTAAGGATGCGTAACGTCCATGATAAGTATCTAACAGCGGATGAGGACGAGGAAACGGTGACTCAAGACAGGAATGGTTCCGACAAGAGAGCTAGATGGATTGTCGAGCCGGTTCGTGGTTCCTTTGAAGTGATCCGTTTAAGGAGCTGCTACGGTAACTACCTCACCGCTTCGAATGAGCGGTTCTTGCTCGGAGCCACTGGACGTAAAGTGGTCTTGTCTAAACCGGCTCGACTCGACTCCTCCGTAGAGTGGGAACCGGTGAGAGAAGGTTCCAAAATGAAGCTCAAGACTAGATACGGAAACTTGCTTCGAGCCAACGGTGGACTTCCTCCATGGCGTAACTCTGTCACGCATGACACTTCTCATGTATTGGATTCTTTCTTGTGGGATGTTGATGTGGTTGAGATTTTGGTGGGAACGACGACTCCGGCTCCAGCTCCAGCTCCGGTGACAACTCCTCCGCCACATAGGAGGCCGTCGTACACGTATTCTCCGGTTTCTAGAACATCTTCAGAAAAATCCGAAGAAGAGTTGACCGTGCCGCCACCGAAATCTGAAGGGAGGCCTATTTACTACCACATCGCGGACGAAGAAGGACACGTGGAGGAAGAATCAGCCGTTGGATATGCGTTGACTTTCAAAGGAAATAGCGTGGAACAGTTGACGCAGGCGTTGCAAGAAGAGACTAGTATGGATGATGTTGTGGTCTGTACACGCCATCCTTCAAACGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCACCTAATAGTGGAACAATGCATGTCATTCTAGTACCCTCAAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF569

Protein Analysis

279

Amino Acids

31.22

Weight (kDa)

6.09

Isoelectric Point (pI)

60.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF569 PF04601 1 - 139 1.3e-72 Beta-trefoil domain of unknown function (DUF569)
Ubiq_DUF_assoc PF22932 197 - 274 2.5e-09 DUF569 associated ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 208
AccII CGCG 1 cut(s) 614
AciI CCGC 6 cut(s) 65, 195, 208, 491, 572, 614
AclWI GGATC 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 525, 606
AcvI CACGTG 1 cut(s) 631
AfaI GTAC 4 cut(s) 512, 742, 825, 835
AfiI CCNNNNNNNGG 5 cut(s) 143, 279, 613, 758, 800
AflIII ACRYGT 2 cut(s) 513, 628
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 4 cut(s) 13, 155, 670, 756
AhlI ACTAGT 1 cut(s) 716
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
AloI GAACNNNNNNTCC 2 cut(s) 439, 471
AluBI AGCT 7 cut(s) 20, 119, 174, 313, 467, 473, 766
AluI AGCT 7 cut(s) 20, 119, 174, 313, 467, 473, 766
Alw26I GTCTC 1 cut(s) 707
AlwI GGATC 1 cut(s) 154
AoxI GGCC 2 cut(s) 503, 593
ApeKI GCWGC 1 cut(s) 174
AsiGI ACCGGT 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 538
AsuHPI GGTGA 4 cut(s) 97, 184, 301, 490
AsuII TTCGAA 1 cut(s) 200
BbrPI CACGTG 1 cut(s) 631
BbvI GCAGC 1 cut(s) 161
BccI CCATC 2 cut(s) 117, 756
BceAI ACGGC 4 cut(s) 11, 490, 632, 775
BcoDI GTCTC 1 cut(s) 707
BcuI ACTAGT 1 cut(s) 716
BfaI CTAG 5 cut(s) 120, 321, 531, 717, 821
BisI GCNGC 2 cut(s) 175, 572
BlsI GCNGC 2 cut(s) 176, 573
BmcAI AGTACT 1 cut(s) 835
BmiI GGNNCC 6 cut(s) 106, 148, 223, 285, 301, 462
BmsI GCATC 1 cut(s) 24
BpmI CTGGAG 2 cut(s) 447, 453
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 3 cut(s) 75, 299, 814
BsaAI YACGTR 2 cut(s) 516, 631
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 362
BsaWI WCCGGW 3 cut(s) 286, 475, 523
BsaXI ACNNNNNCTCC 8 cut(s) 439, 445, 469, 472, 475, 502, 505, 535
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 279, 613, 758, 800
Bse118I RCCGGY 3 cut(s) 136, 253, 286
Bse1I ACTGG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 5 cut(s) 39, 73, 424, 730, 748
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 5 cut(s) 143, 279, 613, 758, 800
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 259, 477
BseXI GCAGC 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 614
BshFI GGCC 2 cut(s) 505, 595
BshTI ACCGGT 1 cut(s) 286
BsiSI CCGG 6 cut(s) 137, 254, 287, 458, 476, 524
BslI CCNNNNNNNGG 5 cut(s) 143, 279, 613, 758, 800
BsmAI GTCTC 1 cut(s) 707
BsnI GGCC 2 cut(s) 505, 595
Bsp119I TTCGAA 1 cut(s) 200
Bsp1407I TGTACA 1 cut(s) 740
Bsp143I GATC 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 6 cut(s) 65, 195, 208, 491, 572, 614
BspANI GGCC 2 cut(s) 505, 595
BspFNI CGCG 1 cut(s) 614
BspLI GGNNCC 6 cut(s) 106, 148, 223, 285, 301, 462
BspPI GGATC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 208
BsrFI RCCGGY 3 cut(s) 136, 253, 286
BsrGI TGTACA 1 cut(s) 740
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 3 cut(s) 136, 253, 286
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 362
Bst4CI ACNGT 5 cut(s) 85, 182, 350, 568, 690
Bst6I CTCTTC 3 cut(s) 552, 705, 780
BstAPI GCANNNNNTGC 1 cut(s) 703
BstAUI TGTACA 1 cut(s) 740
BstBAI YACGTR 2 cut(s) 516, 631
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 699, 764
BstDSI CCRYGG 1 cut(s) 362
BstF5I GGATG 5 cut(s) 39, 73, 424, 730, 748
BstFNI CGCG 1 cut(s) 614
BstKTI GATC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 707
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 214, 703
BstNSI RCATGY 1 cut(s) 815
BstUI CGCG 1 cut(s) 614
BstV1I GCAGC 1 cut(s) 161
BsuRI GGCC 2 cut(s) 505, 595
BtgI CCRYGG 1 cut(s) 362
BtgZI GCGATG 1 cut(s) 595
BtsCI GGATG 5 cut(s) 39, 73, 424, 730, 748
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 699, 764
Cfr10I RCCGGY 3 cut(s) 136, 253, 286
CseI GACGC 1 cut(s) 703
Csp6I GTAC 4 cut(s) 511, 741, 824, 834
CspAI ACCGGT 1 cut(s) 286
CviAII CATG 5 cut(s) 47, 363, 383, 395, 812
CviQI GTAC 4 cut(s) 511, 741, 824, 834
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eam1104I CTCTTC 3 cut(s) 552, 705, 780
EarI CTCTTC 3 cut(s) 552, 705, 780
EciI GGCGGA 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 362
Eco147I AGGCCT 1 cut(s) 595
Eco57I CTGAAG 2 cut(s) 525, 606
Eco72I CACGTG 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 362
EcoT22I ATGCAT 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 5 cut(s) 50, 366, 386, 398, 815
FaiI YATR 8 cut(s) 48, 364, 384, 396, 498, 657, 722, 813
FatI CATG 5 cut(s) 46, 362, 382, 394, 811
Fnu4HI GCNGC 2 cut(s) 175, 572
FokI GGATG 5 cut(s) 46, 80, 431, 735, 737
Fsp4HI GCNGC 2 cut(s) 175, 572
FspBI CTAG 5 cut(s) 120, 321, 531, 717, 821
GluI GCNGC 2 cut(s) 175, 572
GsuI CTGGAG 2 cut(s) 447, 453
HaeIII GGCC 2 cut(s) 505, 595
HapII CCGG 6 cut(s) 137, 254, 287, 458, 476, 524
HgaI GACGC 1 cut(s) 703
Hin1II CATG 5 cut(s) 50, 366, 386, 398, 815
HincII GTYRAC 3 cut(s) 564, 663, 693
HindII GTYRAC 3 cut(s) 564, 663, 693
HinfI GANTC 6 cut(s) 88, 261, 266, 404, 454, 641
HpaII CCGG 6 cut(s) 137, 254, 287, 458, 476, 524
HphI GGTGA 4 cut(s) 97, 184, 301, 490
Hpy166II GTNNAC 6 cut(s) 353, 513, 564, 663, 693, 743
Hpy188I TCNGA 5 cut(s) 109, 221, 544, 553, 586
Hpy188III TCNNGA 3 cut(s) 92, 316, 531
Hpy8I GTNNAC 6 cut(s) 353, 513, 564, 663, 693, 743
Hpy99I CGWCG 2 cut(s) 454, 511
HpyAV CCTTC 4 cut(s) 290, 581, 617, 762
HpyCH4III ACNGT 5 cut(s) 85, 182, 350, 568, 690
HpyCH4IV ACGT 4 cut(s) 42, 232, 515, 630
HpyCH4V TGCA 3 cut(s) 706, 784, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 703
HpySE526I ACGT 4 cut(s) 42, 232, 515, 630
Hsp92II CATG 5 cut(s) 50, 366, 386, 398, 815
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 5 cut(s) 171, 221, 466, 472, 478
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 24
MaeI CTAG 5 cut(s) 120, 321, 531, 717, 821
MaeII ACGT 4 cut(s) 42, 232, 515, 630
MaeIII GTNAC 6 cut(s) 38, 85, 182, 368, 376, 478
MalI GATC 1 cut(s) 161
MbiI CCGCTC 1 cut(s) 208
MboI GATC 1 cut(s) 159
MboII GAAGA 7 cut(s) 531, 566, 569, 632, 650, 722, 767
MlyI GAGTC 4 cut(s) 82, 255, 260, 448
MmeI TCCRAC 2 cut(s) 132, 631
Mph1103I ATGCAT 1 cut(s) 813
MroXI GAANNNNTTC 1 cut(s) 538
MseI TTAA 2 cut(s) 167, 838
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 6 cut(s) 137, 254, 287, 458, 476, 524
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 2 cut(s) 214, 703
NcoI CCATGG 1 cut(s) 362
NdeII GATC 1 cut(s) 159
NlaIII CATG 5 cut(s) 50, 366, 386, 398, 815
NlaIV GGNNCC 6 cut(s) 106, 148, 223, 285, 301, 462
NmuCI GTSAC 3 cut(s) 85, 376, 478
NsiI ATGCAT 1 cut(s) 813
NspI RCATGY 1 cut(s) 815
NspV TTCGAA 1 cut(s) 200
PceI AGGCCT 1 cut(s) 595
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 2 cut(s) 404, 641
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 2 cut(s) 176, 573
PleI GAGTC 4 cut(s) 82, 255, 260, 448
PmaCI CACGTG 1 cut(s) 631
PmlI CACGTG 1 cut(s) 631
PpsI GAGTC 4 cut(s) 82, 255, 260, 448
Ppu21I YACGTR 2 cut(s) 516, 631
PspCI CACGTG 1 cut(s) 631
PspN4I GGNNCC 6 cut(s) 106, 148, 223, 285, 301, 462
RsaI GTAC 4 cut(s) 512, 742, 825, 835
RsaNI GTAC 4 cut(s) 511, 741, 824, 834
SaqAI TTAA 2 cut(s) 167, 838
SatI GCNGC 2 cut(s) 175, 572
Sau3AI GATC 1 cut(s) 159
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 4 cut(s) 82, 255, 260, 448
SfaNI GCATC 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 200
SmlI CTYRAG 3 cut(s) 90, 314, 829
SmoI CTYRAG 3 cut(s) 90, 314, 829
SpeI ACTAGT 1 cut(s) 716
SseBI AGGCCT 1 cut(s) 595
SsiI CCGC 6 cut(s) 65, 195, 208, 491, 572, 614
SspMI CTAG 5 cut(s) 120, 321, 531, 717, 821
StuI AGGCCT 1 cut(s) 595
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 5 cut(s) 85, 182, 350, 568, 690
TaiI ACGT 4 cut(s) 45, 235, 518, 633
TaqI TCGA 5 cut(s) 132, 200, 259, 264, 340
TatI WGTACW 2 cut(s) 740, 833
TauI GCSGC 1 cut(s) 574
TfiI GAWTC 2 cut(s) 404, 641
Tru1I TTAA 2 cut(s) 167, 838
Tru9I TTAA 2 cut(s) 167, 838
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 3 cut(s) 85, 376, 478
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 3 cut(s) 85, 376, 478
TspDTI ATGAA 1 cut(s) 323
TspGWI ACGGA 3 cut(s) 152, 262, 342
TspRI CASTG 1 cut(s) 232
XbaI TCTAGA 1 cut(s) 530
XceI RCATGY 1 cut(s) 815
XmnI GAANNNNTTC 1 cut(s) 538
XspI CTAG 5 cut(s) 120, 321, 531, 717, 821
ZrmI AGTACT 1 cut(s) 835
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.