Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Reverse (-)

53274213 .. 53289865

Gene Structure 15653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0360000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAGCCGACGAGCAAGAAGATAAAGATCGAGAAGATTGACAACTTGCCGGCGAGGCAGGTGACGTATTCGAAGAGGAGAAGAGGGCTTTTGAAGAAAGCTGGAGAGCTTTCAGTTCTATGTGATTGTGAGTTTTCTGTCATCATCTTTTCTGCTACTGGCAAGCTCTGTGAGTCCTCCAGCTCCAGTACGAAGGATGTCATTGCGAGGTATGAATCGCACATTGAAAATGTGGGAAAGTTGGACCGGCCATCTCTTGAGCTCGAGCATGACTGCATCAGGTTGAGTAGGGAACTTGCGAACAAGAGCGGCAACATAAGGCAGATGAATGGAGAGGATCTAGAAGGGCTGAACATAGATGAGTTGCAGAGATTGGAGAAAGAGATTGAAGGATGTCTTAACCGTGTGAATCAAACTAAGGAAGAAAAGTTTAGCAGTGAAGTTCTGGAACTTGAGGCAAAGGGAGCTGAGTTGATGGACGCGAGTAACCAATTAAGGCAGGATATAGGGATGTTATCCAATGGAAGTGTCACCTTTGAGTCAGAAATCTCGACTGCTGAAGAAGGTTGGTTATCGGAGTCTGCCACAAATGCCAGCAGCTGCCTTTCAACTGATTCTTCCCTAGATGATCACTCTGGCACCGACACTTTATCTCTCAAACTTGGGCTTCCTTACGGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

227

Amino Acids

25.01

Weight (kDa)

4.98

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	12 - 57	3.4e-19	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	88 - 169	5.4e-14	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	638
AccBSI	CCGCTC	1 cut(s)	309
AccII	CGCG	1 cut(s)	482
AciI	CCGC	1 cut(s)	309
AclWI	GGATC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgsI	TTSAA	4 cut(s)	94, 227, 389, 609
AluBI	AGCT	7 cut(s)	101, 109, 166, 183, 262, 467, 600
AluI	AGCT	7 cut(s)	101, 109, 166, 183, 262, 467, 600
Alw21I	GWGCWC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	600
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	597, 600
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	73, 523
AsuII	TTCGAA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	587, 609
BccI	CCATC	2 cut(s)	259, 469
BclI	TGATCA	1 cut(s)	628
BfaI	CTAG	2 cut(s)	341, 623
BfuAI	ACCTGC	1 cut(s)	49
BglI	GCCNNNNNGGC	1 cut(s)	55
BisI	GCNGC	3 cut(s)	310, 598, 601
BlsI	GCNGC	3 cut(s)	311, 599, 602
Bme18I	GGWCC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	640
BmsI	GCATC	1 cut(s)	285
BpmI	CTGGAG	3 cut(s)	123, 163, 169
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	278, 473
BsaBI	GATNNNNATC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse118I	RCCGGY	2 cut(s)	49, 246
Bse1I	ACTGG	2 cut(s)	163, 186
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	26
BseGI	GGATG	3 cut(s)	202, 398, 516
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	2 cut(s)	163, 186
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	587, 609
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	50, 247
BslI	CCNNNNNNNGG	1 cut(s)	677
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	27, 337, 628
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	638
BsrBI	CCGCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	2 cut(s)	49, 246
BsrI	ACTGG	2 cut(s)	163, 186
BssAI	RCCGGY	2 cut(s)	49, 246
BssMI	GATC	3 cut(s)	27, 337, 628
Bst4CI	ACNGT	2 cut(s)	404, 677
Bst6I	CTCTTC	2 cut(s)	68, 76
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	51, 164, 595
BstDEI	CTNAG	2 cut(s)	417, 468
BstF5I	GGATG	3 cut(s)	202, 398, 516
BstFNI	CGCG	1 cut(s)	482
BstKTI	GATC	3 cut(s)	30, 340, 631
BstMBI	GATC	3 cut(s)	27, 337, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 464, 590
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	587, 609
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	202, 398, 516
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	51, 164, 595
CaiI	CAGNNNCTG	1 cut(s)	600
Cfr10I	RCCGGY	2 cut(s)	49, 246
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	269
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	2 cut(s)	417, 468
DpnI	GATC	3 cut(s)	29, 339, 630
DpnII	GATC	3 cut(s)	27, 337, 628
EaeI	YGGCCR	1 cut(s)	248
Eam1104I	CTCTTC	2 cut(s)	68, 76
EarI	CTCTTC	2 cut(s)	68, 76
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	1 cut(s)	272
FaiI	YATR	6 cut(s)	121, 213, 270, 317, 356, 506
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	3 cut(s)	310, 598, 601
FokI	GGATG	3 cut(s)	209, 405, 523
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	3 cut(s)	310, 598, 601
FspBI	CTAG	2 cut(s)	341, 623
GluI	GCNGC	3 cut(s)	310, 598, 601
GsuI	CTGGAG	3 cut(s)	123, 163, 169
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	2 cut(s)	50, 247
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	1 cut(s)	272
HinfI	GANTC	6 cut(s)	173, 215, 409, 539, 578, 614
HpaII	CCGG	2 cut(s)	50, 247
HphI	GGTGA	2 cut(s)	73, 523
Hpy188I	TCNGA	2 cut(s)	544, 577
Hpy188III	TCNNGA	5 cut(s)	31, 257, 341, 446, 550
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	4 cut(s)	187, 338, 383, 557
HpyCH4III	ACNGT	2 cut(s)	404, 677
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	276, 367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 464, 590
HpyF3I	CTNAG	2 cut(s)	417, 468
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	272
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	27, 337, 628
LmnI	GCTCC	2 cut(s)	188, 464
Lsp1109I	GCAGC	2 cut(s)	587, 609
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	2 cut(s)	341, 623
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	3 cut(s)	61, 485, 529
MalI	GATC	3 cut(s)	29, 339, 630
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	3 cut(s)	27, 337, 628
MboII	GAAGA	8 cut(s)	31, 46, 85, 93, 106, 434, 572, 609
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	1 cut(s)	491
MlyI	GAGTC	3 cut(s)	182, 548, 587
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	7 cut(s)	48, 69, 77, 187, 201, 328, 448
MroNI	GCCGGC	1 cut(s)	49
MseI	TTAA	2 cut(s)	399, 494
MspA1I	CMGCKG	1 cut(s)	600
MspI	CCGG	2 cut(s)	50, 247
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	3 cut(s)	55, 464, 590
NaeI	GCCGGC	1 cut(s)	51
NdeII	GATC	3 cut(s)	27, 337, 628
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	640
NmuCI	GTSAC	2 cut(s)	61, 529
NspV	TTCGAA	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	49
PdiI	GCCGGC	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	215, 409, 614
PkrI	GCNGC	3 cut(s)	311, 599, 602
PleI	GAGTC	3 cut(s)	181, 547, 586
PpsI	GAGTC	3 cut(s)	181, 547, 586
Psp124BI	GAGCTC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	640
PspPI	GGNCC	1 cut(s)	244
PspXI	VCTCGAGB	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	600
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	399, 494
SatI	GCNGC	3 cut(s)	310, 598, 601
Sau3AI	GATC	3 cut(s)	27, 337, 628
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	3 cut(s)	182, 548, 587
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	263
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	263
SmlI	CTYRAG	3 cut(s)	257, 263, 452
SmoI	CTYRAG	3 cut(s)	257, 263, 452
Sse9I	AATT	1 cut(s)	491
SsiI	CCGC	1 cut(s)	309
SspMI	CTAG	2 cut(s)	341, 623
SstI	GAGCTC	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	404, 677
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	4 cut(s)	30, 71, 264, 551
TasI	AATT	1 cut(s)	491
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	3 cut(s)	215, 409, 614
Tru1I	TTAA	2 cut(s)	399, 494
Tru9I	TTAA	2 cut(s)	399, 494
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	2 cut(s)	61, 529
TseI	GCWGC	2 cut(s)	597, 600
Tsp45I	GTSAC	2 cut(s)	61, 529
TspDTI	ATGAA	3 cut(s)	17, 228, 341
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	244
XbaI	TCTAGA	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	263
XspI	CTAG	2 cut(s)	341, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.