Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Reverse (-)

2878942 .. 2879871

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGATCGTTTCTGTCAAGCTTCATCGGAGGAGCGCCGGCGGATGACTCCGACGCGTCCGGGGATGAGCCCGGGGTGACGTCGTTTCACTCGTCGGCCAGGTGGCAGCTTCACTTGAACTCCCACAAGGAATCCTCCCAGCTGCTGGTGATCGATTTCTCGGCGTCGTGGTGCGGGCCCTGCCGGTTCATTGAGCCGGCCATCCACGCCATGGCCGCCAAGTTCACCGACGTCCAGTTCGCCAAGATCGACGTCGATGAGCTCTCTGAAGTGGCGCAGGAGTTTGGAGTGCAGGCAATGCCGACGTTCGTGCTGTTGAAGAAAGGGAAGGAAGTGGATCGTGTGATCGGCGCGAAAAAGGACGAGCTCGAGAAGAAGGTCGAGAAATACCGCTCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

134

Amino Acids

14.59

Weight (kDa)

5.32

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	83, 234, 255
AccB7I	CCANNNNNTGG	2 cut(s)	145, 211
AccBSI	CCGCTC	1 cut(s)	393
AccII	CGCG	2 cut(s)	56, 353
AciI	CCGC	4 cut(s)	41, 174, 216, 391
AclWI	GGATC	2 cut(s)	13, 345
AcoI	YGGCCR	3 cut(s)	96, 198, 213
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	4 cut(s)	80, 164, 231, 252
AfiI	CCNNNNNNNGG	2 cut(s)	145, 211
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	118, 319
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	5 cut(s)	21, 109, 142, 262, 367
AluI	AGCT	5 cut(s)	21, 109, 142, 262, 367
Alw21I	GWGCWC	2 cut(s)	264, 369
AlwI	GGATC	2 cut(s)	13, 345
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	2 cut(s)	71, 368
AoxI	GGCC	4 cut(s)	96, 176, 198, 213
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	106, 142
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	3 cut(s)	37, 277, 353
AspS9I	GGNCC	2 cut(s)	176, 177
AsuC2I	CCSGG	3 cut(s)	61, 72, 73
AsuHPI	GGTGA	3 cut(s)	88, 160, 217
AvaI	CYCGRG	2 cut(s)	71, 368
BaeGI	GKGCMC	1 cut(s)	180
BanII	GRGCYC	4 cut(s)	72, 180, 264, 369
Bbv12I	GWGCWC	2 cut(s)	264, 369
BbvI	GCAGC	2 cut(s)	118, 129
BccI	CCATC	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	100
BcnI	CCSGG	3 cut(s)	61, 72, 73
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	3 cut(s)	107, 143, 216
BlsI	GCNGC	3 cut(s)	108, 144, 217
Bme1390I	CCNGG	4 cut(s)	61, 72, 73, 100
BmeT110I	CYCGRG	2 cut(s)	71, 368
BmgT120I	GGNCC	2 cut(s)	176, 177
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	4 cut(s)	61, 72, 73, 100
BpuMI	CCSGG	3 cut(s)	61, 72, 73
Bsa29I	ATCGAT	1 cut(s)	153
BsaHI	GRCGYC	4 cut(s)	80, 164, 231, 252
BsaJI	CCNNGG	4 cut(s)	60, 71, 72, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 211
Bse118I	RCCGGY	3 cut(s)	37, 183, 196
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	4 cut(s)	60, 71, 72, 210
BseGI	GGATG	3 cut(s)	49, 70, 201
BseLI	CCNNNNNNNGG	2 cut(s)	145, 211
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	118, 129
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	56, 353
BshFI	GGCC	4 cut(s)	98, 178, 200, 215
BshVI	ATCGAT	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	264, 369
BsiHKCI	CYCGRG	2 cut(s)	71, 368
BsiSI	CCGG	5 cut(s)	38, 60, 72, 184, 197
BslI	CCNNNNNNNGG	2 cut(s)	145, 211
BsnI	GGCC	4 cut(s)	98, 178, 200, 215
BsoBI	CYCGRG	2 cut(s)	71, 368
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	4 cut(s)	72, 180, 264, 369
Bsp143I	GATC	5 cut(s)	5, 150, 246, 337, 345
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	4 cut(s)	41, 174, 216, 391
BspANI	GGCC	4 cut(s)	98, 178, 200, 215
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	2 cut(s)	56, 353
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	13, 345
BsrBI	CCGCTC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	3 cut(s)	37, 183, 196
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	3 cut(s)	37, 183, 196
BssECI	CCNNGG	4 cut(s)	60, 71, 72, 210
BssMI	GATC	5 cut(s)	5, 150, 246, 337, 345
BssNI	GRCGYC	4 cut(s)	80, 164, 231, 252
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	100
BstACI	GRCGYC	4 cut(s)	80, 164, 231, 252
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	4 cut(s)	39, 176, 198, 294
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	49, 70, 201
BstFNI	CGCG	2 cut(s)	56, 353
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	3 cut(s)	37, 277, 353
BstKTI	GATC	5 cut(s)	8, 153, 249, 340, 348
BstMBI	GATC	5 cut(s)	5, 150, 246, 337, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 206, 215, 298
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	4 cut(s)	59, 70, 71, 98
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	2 cut(s)	56, 353
BstV1I	GCAGC	2 cut(s)	118, 129
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	4 cut(s)	98, 178, 200, 215
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	49, 70, 201
Cac8I	GCNNGC	4 cut(s)	39, 176, 198, 294
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	3 cut(s)	37, 277, 353
Cfr10I	RCCGGY	3 cut(s)	37, 183, 196
Cfr13I	GGNCC	2 cut(s)	176, 177
Cfr9I	CCCGGG	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	3 cut(s)	45, 62, 153
CviAII	CATG	1 cut(s)	211
DpnI	GATC	5 cut(s)	7, 152, 248, 339, 347
DpnII	GATC	5 cut(s)	5, 150, 246, 337, 345
EaeI	YGGCCR	3 cut(s)	96, 198, 213
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	2 cut(s)	262, 367
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	4 cut(s)	72, 180, 264, 369
Eco53kI	GAGCTC	2 cut(s)	262, 367
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	2 cut(s)	71, 368
EcoICRI	GAGCTC	2 cut(s)	262, 367
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	4 cut(s)	72, 180, 264, 369
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	214
FaiI	YATR	1 cut(s)	212
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	107, 143, 216
FokI	GGATG	3 cut(s)	56, 77, 188
FriOI	GRGCYC	4 cut(s)	72, 180, 264, 369
Fsp4HI	GCNGC	3 cut(s)	107, 143, 216
GlaI	GCGC	3 cut(s)	36, 276, 352
GluI	GCNGC	3 cut(s)	107, 143, 216
GsaI	CCCAGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	4 cut(s)	98, 178, 200, 215
HapII	CCGG	5 cut(s)	38, 60, 72, 184, 197
HgaI	GACGC	3 cut(s)	45, 62, 153
HhaI	GCGC	3 cut(s)	37, 277, 353
Hin1I	GRCGYC	4 cut(s)	80, 164, 231, 252
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	3 cut(s)	35, 275, 351
HinP1I	GCGC	3 cut(s)	35, 275, 351
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	2 cut(s)	47, 131
HpaII	CCGG	5 cut(s)	38, 60, 72, 184, 197
HphI	GGTGA	3 cut(s)	88, 160, 217
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	3 cut(s)	29, 52, 268
Hpy188III	TCNNGA	2 cut(s)	370, 382
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	8 cut(s)	56, 85, 97, 169, 233, 254, 257, 307
HpyAV	CCTTC	2 cut(s)	322, 370
HpyCH4IV	ACGT	4 cut(s)	80, 231, 252, 305
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 206, 215, 298
HpySE526I	ACGT	4 cut(s)	80, 231, 252, 305
Hsp92I	GRCGYC	4 cut(s)	80, 164, 231, 252
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	3 cut(s)	35, 275, 351
KroI	GCCGGC	2 cut(s)	37, 196
KroNI	GCCGGC	2 cut(s)	39, 198
Kzo9I	GATC	5 cut(s)	5, 150, 246, 337, 345
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	2 cut(s)	118, 129
MaeII	ACGT	4 cut(s)	80, 231, 252, 305
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	5 cut(s)	7, 152, 248, 339, 347
MbiI	CCGCTC	1 cut(s)	393
MboI	GATC	5 cut(s)	5, 150, 246, 337, 345
MboII	GAAGA	2 cut(s)	331, 385
MhlI	GDGCHC	4 cut(s)	72, 180, 264, 369
MluI	ACGCGT	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	23, 145
MreI	CGCCGGCG	1 cut(s)	37
MroNI	GCCGGC	2 cut(s)	37, 196
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	5 cut(s)	38, 60, 72, 184, 197
MspR9I	CCNGG	4 cut(s)	61, 72, 73, 100
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	2 cut(s)	56, 353
MwoI	GCNNNNNNNGC	4 cut(s)	180, 206, 215, 298
NaeI	GCCGGC	2 cut(s)	39, 198
NciI	CCSGG	3 cut(s)	61, 72, 73
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	5 cut(s)	5, 150, 246, 337, 345
NgoMIV	GCCGGC	2 cut(s)	37, 196
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	89, 246
PdiI	GCCGGC	2 cut(s)	39, 198
PfeI	GAWTC	1 cut(s)	131
PflMI	CCANNNNNTGG	2 cut(s)	145, 211
PkrI	GCNGC	3 cut(s)	108, 144, 217
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp124BI	GAGCTC	2 cut(s)	264, 369
Psp6I	CCWGG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	178
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	176, 177
PstNI	CAGNNNCTG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	142
SacI	GAGCTC	2 cut(s)	264, 369
SatI	GCNGC	3 cut(s)	107, 143, 216
Sau3AI	GATC	5 cut(s)	5, 150, 246, 337, 345
Sau96I	GGNCC	2 cut(s)	176, 177
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	4 cut(s)	61, 72, 73, 100
SduI	GDGCHC	4 cut(s)	72, 180, 264, 369
Sfr274I	CTCGAG	1 cut(s)	368
SgrAI	CRCCGGYG	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	368
SmaI	CCCGGG	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SsiI	CCGC	4 cut(s)	41, 174, 216, 391
SstI	GAGCTC	2 cut(s)	264, 369
StyD4I	CCNGG	4 cut(s)	59, 70, 71, 98
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	4 cut(s)	83, 234, 255, 308
TaqI	TCGA	5 cut(s)	153, 249, 255, 369, 381
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	106, 142
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	13, 178
TspMI	CCCGGG	1 cut(s)	71
Van91I	CCANNNNNTGG	2 cut(s)	145, 211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	368
XmaI	CCCGGG	1 cut(s)	71
ZraI	GACGTC	3 cut(s)	81, 232, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.