Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

86228306 .. 86228985

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG633500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGATCGCTTCTGTCAAGCCTGATCGGAGGAGGATCACTGCCGGCGGAGGACTCCGCCGCGTCGTCGGAAGACTCTCGGGTGACGTCGTTTCACTCATCCGCCAGGTGGCAGCTCCACTTCAATTCCATCAAGGACACCTCCAAACTGCTGGTGATCGATTTCTCGGCGTCGTGGTGCGGGCCCTGCAGGTTCATAGAGCCGGCCATCCACGCCATGGCGGCTAAGTTCACCGACGTCGACTTCGCCAAGATCGACGTCGACGAGCTCTCTGATGTGTCTCAGGAATTTGGGGTGCAGGCAATGCCGACCTTTGTGCTTTTGAAGAACGGGAAGGAGGTGGATCGGGTTGTTGGTGCCAAGAAAGATGAGCTTGAGAAGAAGGTTGAGAAGTACCGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

135

Amino Acids

14.77

Weight (kDa)

5.34

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	42 - 130	1.1e-27	Thioredoxin
Thioredoxin_2	PF13098	45 - 126	3e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	89, 240, 261
Acc36I	ACCTGC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	356
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccI	GTMKAC	2 cut(s)	240, 261
AccII	CGCG	1 cut(s)	62
AciI	CCGC	6 cut(s)	47, 57, 60, 102, 180, 221
AclWI	GGATC	3 cut(s)	13, 43, 351
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	4 cut(s)	86, 170, 237, 258
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	108, 217
AgsI	TTSAA	2 cut(s)	124, 325
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	3 cut(s)	115, 268, 373
AluI	AGCT	3 cut(s)	115, 268, 373
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	3 cut(s)	13, 43, 351
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	182, 204
ApaI	GGGCCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	2 cut(s)	182, 183
AsuHPI	GGTGA	3 cut(s)	94, 166, 223
AvaI	CYCGRG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	2 cut(s)	186, 270
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	137, 215
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	3 cut(s)	60, 113, 222
BlsI	GCNGC	3 cut(s)	61, 114, 223
Bme1390I	CCNGG	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	182, 183
BmiI	GGNNCC	2 cut(s)	184, 358
BmrFI	CCNGG	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	159
BsaHI	GRCGYC	4 cut(s)	86, 170, 237, 258
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 217
Bse118I	RCCGGY	2 cut(s)	43, 202
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	98, 207
BseLI	CCNNNNNNNGG	2 cut(s)	108, 217
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	184, 206
BshNI	GGYRCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	44, 203
BslI	CCNNNNNNNGG	2 cut(s)	108, 217
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	184, 206
BsoBI	CYCGRG	1 cut(s)	78
Bsp120I	GGGCCC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	186, 270
Bsp143I	GATC	6 cut(s)	5, 24, 35, 156, 252, 343
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	6 cut(s)	47, 57, 60, 102, 180, 221
BspANI	GGCC	2 cut(s)	184, 206
BspCNI	CTCAG	1 cut(s)	295
BspDI	ATCGAT	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	184, 358
BspMAI	CTGCAG	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	180
BspPI	GGATC	3 cut(s)	13, 43, 351
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	2 cut(s)	43, 202
BssAI	RCCGGY	2 cut(s)	43, 202
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	6 cut(s)	5, 24, 35, 156, 252, 343
BssNI	GRCGYC	4 cut(s)	86, 170, 237, 258
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	398
BstACI	GRCGYC	4 cut(s)	86, 170, 237, 258
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstC8I	GCNNGC	4 cut(s)	45, 182, 204, 300
BstDEI	CTNAG	2 cut(s)	225, 282
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	98, 207
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	6 cut(s)	8, 27, 38, 159, 255, 346
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	6 cut(s)	5, 24, 35, 156, 252, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 212, 221, 304
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	186
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	78
BstXI	CCANNNNNNTGG	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	184, 206
BsuTUI	ATCGAT	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	98, 207
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	180
Cac8I	GCNNGC	4 cut(s)	45, 182, 204, 300
Cfr10I	RCCGGY	2 cut(s)	43, 202
Cfr13I	GGNCC	2 cut(s)	182, 183
ClaI	ATCGAT	1 cut(s)	159
CseI	GACGC	2 cut(s)	51, 159
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	8 cut(s)	21, 115, 184, 202, 206, 224, 268, 373
CviKI_1	RGCY	8 cut(s)	21, 115, 184, 202, 206, 224, 268, 373
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	225, 282
DpnI	GATC	6 cut(s)	7, 26, 37, 158, 254, 345
DpnII	GATC	6 cut(s)	5, 24, 35, 156, 252, 343
EaeI	YGGCCR	1 cut(s)	204
EciI	GGCGGA	3 cut(s)	46, 62, 91
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	186, 270
Eco53kI	GAGCTC	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	2 cut(s)	186, 270
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	220
FaiI	YATR	2 cut(s)	197, 218
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	173
FblI	GTMKAC	2 cut(s)	240, 261
Fnu4HI	GCNGC	3 cut(s)	60, 113, 222
FokI	GGATG	2 cut(s)	85, 194
FriOI	GRGCYC	2 cut(s)	186, 270
Fsp4HI	GCNGC	3 cut(s)	60, 113, 222
GluI	GCNGC	3 cut(s)	60, 113, 222
HaeIII	GGCC	2 cut(s)	184, 206
HapII	CCGG	2 cut(s)	44, 203
HgaI	GACGC	2 cut(s)	51, 159
Hin1I	GRCGYC	4 cut(s)	86, 170, 237, 258
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	2 cut(s)	241, 262
HindII	GTYRAC	2 cut(s)	241, 262
HinfI	GANTC	2 cut(s)	53, 74
HpaII	CCGG	2 cut(s)	44, 203
HphI	GGTGA	3 cut(s)	94, 166, 223
Hpy166II	GTNNAC	4 cut(s)	231, 241, 262, 401
Hpy188I	TCNGA	3 cut(s)	29, 70, 274
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	4 cut(s)	231, 241, 262, 401
Hpy99I	CGWCG	9 cut(s)	67, 70, 91, 175, 239, 242, 260, 263, 266
HpyAV	CCTTC	2 cut(s)	328, 376
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	3 cut(s)	86, 237, 258
HpyCH4V	TGCA	2 cut(s)	189, 298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 212, 221, 304
HpyF3I	CTNAG	2 cut(s)	225, 282
HpySE526I	ACGT	3 cut(s)	86, 237, 258
Hsp92I	GRCGYC	4 cut(s)	86, 170, 237, 258
Hsp92II	CATG	1 cut(s)	220
KroI	GCCGGC	2 cut(s)	43, 202
KroNI	GCCGGC	2 cut(s)	45, 204
Kzo9I	GATC	6 cut(s)	5, 24, 35, 156, 252, 343
LmnI	GCTCC	1 cut(s)	120
Lsp1109I	GCAGC	1 cut(s)	124
MaeII	ACGT	3 cut(s)	86, 237, 258
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	6 cut(s)	7, 26, 37, 158, 254, 345
MboI	GATC	6 cut(s)	5, 24, 35, 156, 252, 343
MboII	GAAGA	3 cut(s)	83, 337, 391
MhlI	GDGCHC	2 cut(s)	186, 270
MluCI	AATT	2 cut(s)	124, 287
MlyI	GAGTC	2 cut(s)	47, 68
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	5 cut(s)	23, 26, 43, 151, 331
MroNI	GCCGGC	2 cut(s)	43, 202
MspI	CCGG	2 cut(s)	44, 203
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	186, 212, 221, 304
NaeI	GCCGGC	2 cut(s)	45, 204
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	6 cut(s)	5, 24, 35, 156, 252, 343
NgoMIV	GCCGGC	2 cut(s)	43, 202
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	184, 358
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 261
PdiI	GCCGGC	2 cut(s)	45, 204
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	61, 114, 223
PleI	GAGTC	2 cut(s)	47, 68
PpsI	GAGTC	2 cut(s)	47, 68
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	184, 358
PspOMI	GGGCCC	1 cut(s)	182
PspPI	GGNCC	2 cut(s)	182, 183
PstI	CTGCAG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SacI	GAGCTC	1 cut(s)	270
SalI	GTCGAC	2 cut(s)	239, 260
SatI	GCNGC	3 cut(s)	60, 113, 222
Sau3AI	GATC	6 cut(s)	5, 24, 35, 156, 252, 343
Sau96I	GGNCC	2 cut(s)	182, 183
SbfI	CCTGCAGG	1 cut(s)	191
SchI	GAGTC	2 cut(s)	47, 68
ScrFI	CCNGG	1 cut(s)	106
SdaI	CCTGCAGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	186, 270
SfcI	CTRYAG	1 cut(s)	187
SgrDI	CGTCGACG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse8387I	CCTGCAGG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	124, 287
SsiI	CCGC	6 cut(s)	47, 57, 60, 102, 180, 221
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	3 cut(s)	89, 240, 261
TaqI	TCGA	4 cut(s)	159, 240, 255, 261
TasI	AATT	2 cut(s)	124, 287
TauI	GCSGC	2 cut(s)	62, 224
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	2 cut(s)	240, 261
ZraI	GACGTC	3 cut(s)	87, 238, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.