Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Reverse (-)

3007179 .. 3008550

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1045800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGGGCCCTTCTGTCAAGCTTGATGGGCGCCGGCGGAGCGCCGGCAGACGACTCGGCATGGGAGGAGTCCGGAGTGACGTCTTTTCACTCGTCGGAGAGATGGCAGCTTCACTTGAAAACCCATGAGGAATCCTCCCAGCTGCTGGTGGTCGATTTCTCGGCGTCGTGGTGCGGGCCCTGCCGGTTCATAGAGCCCGCCATCCGCGCCATGGCCGCCAAGTTCACCGACGTCCAGTTCGCCAAGATCGACGTCGACGAGCTATCTAAAGTGGCGCAGGAATTCGGTGTGCAGGCAATGCCAACGTTCGTCCTGTTGAAGAAGGGGAAGGAAGTGGATCGGGTGATCGGAGCGAAAAAAGATGAGCTCGAGAAAAAGGTCGAGAAACACCGCTCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

134

Amino Acids

14.64

Weight (kDa)

5.8

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	32 - 128	2.6e-27	Thioredoxin
Thioredoxin_2	PF13098	45 - 124	6.9e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	83, 234, 255
AccB1I	GGYRCC	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	6 cut(s)	36, 174, 198, 205, 216, 391
AclI	AACGTT	1 cut(s)	305
AclWI	GGATC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	281
AcyI	GRCGYC	5 cut(s)	30, 80, 164, 231, 252
AfiI	CCNNNNNNNGG	2 cut(s)	145, 211
AgsI	TTSAA	2 cut(s)	118, 319
AluBI	AGCT	5 cut(s)	21, 109, 142, 262, 367
AluI	AGCT	5 cut(s)	21, 109, 142, 262, 367
Alw21I	GWGCWC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	3 cut(s)	6, 176, 213
ApaI	GGGCCC	2 cut(s)	10, 180
ApeKI	GCWGC	2 cut(s)	106, 142
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	4 cut(s)	32, 43, 209, 277
AspS9I	GGNCC	4 cut(s)	6, 7, 176, 177
AsuHPI	GGTGA	2 cut(s)	217, 355
AvaI	CYCGRG	1 cut(s)	368
BaeGI	GKGCMC	2 cut(s)	10, 180
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	4 cut(s)	10, 180, 198, 369
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	118, 129
BccI	CCATC	3 cut(s)	19, 96, 209
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BfoI	RGCGCY	2 cut(s)	33, 44
BisI	GCNGC	3 cut(s)	107, 143, 216
BlsI	GCNGC	3 cut(s)	108, 144, 217
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	4 cut(s)	6, 7, 176, 177
BmiI	GGNNCC	4 cut(s)	7, 8, 31, 178
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BsaHI	GRCGYC	5 cut(s)	30, 80, 164, 231, 252
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 211
Bse118I	RCCGGY	3 cut(s)	32, 43, 183
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	145, 211
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	2 cut(s)	10, 180
BseXI	GCAGC	2 cut(s)	118, 129
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	8, 178, 215
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	4 cut(s)	33, 44, 72, 184
BslI	CCNNNNNNNGG	2 cut(s)	145, 211
BsnI	GGCC	3 cut(s)	8, 178, 215
BsoBI	CYCGRG	1 cut(s)	368
Bsp120I	GGGCCC	2 cut(s)	6, 176
Bsp1286I	GDGCHC	4 cut(s)	10, 180, 198, 369
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	3 cut(s)	246, 337, 345
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	6 cut(s)	36, 174, 198, 205, 216, 391
BspANI	GGCC	3 cut(s)	8, 178, 215
BspEI	TCCGGA	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	7, 8, 31, 178
BspPI	GGATC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	3 cut(s)	32, 43, 183
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	3 cut(s)	32, 43, 183
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	246, 337, 345
BssNI	GRCGYC	5 cut(s)	30, 80, 164, 231, 252
BssT1I	CCWWGG	1 cut(s)	210
BstACI	GRCGYC	5 cut(s)	30, 80, 164, 231, 252
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	5 cut(s)	34, 45, 176, 198, 294
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	2 cut(s)	33, 44
BstHHI	GCGC	4 cut(s)	32, 43, 209, 277
BstKTI	GATC	3 cut(s)	249, 340, 348
BstMBI	GATC	3 cut(s)	246, 337, 345
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 38, 180, 206, 215, 298
BstSLI	GKGCMC	2 cut(s)	10, 180
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	118, 129
BsuRI	GGCC	3 cut(s)	8, 178, 215
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	201
Cac8I	GCNNGC	5 cut(s)	34, 45, 176, 198, 294
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	4 cut(s)	32, 43, 209, 277
Cfr10I	RCCGGY	3 cut(s)	32, 43, 183
Cfr13I	GGNCC	4 cut(s)	6, 7, 176, 177
CseI	GACGC	1 cut(s)	153
CviAII	CATG	3 cut(s)	60, 125, 211
CviJI	RGCY	9 cut(s)	8, 21, 109, 142, 178, 196, 215, 262, 367
CviKI_1	RGCY	9 cut(s)	8, 21, 109, 142, 178, 196, 215, 262, 367
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	3 cut(s)	248, 339, 347
DpnII	GATC	3 cut(s)	246, 337, 345
EaeI	YGGCCR	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	4 cut(s)	10, 180, 198, 369
Eco53kI	GAGCTC	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	367
EcoO109I	RGGNCCY	3 cut(s)	6, 7, 177
EcoRI	GAATTC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	4 cut(s)	10, 180, 198, 369
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	63, 128, 214
FaiI	YATR	4 cut(s)	61, 126, 191, 212
FatI	CATG	3 cut(s)	59, 124, 210
FauI	CCCGC	2 cut(s)	167, 205
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	107, 143, 216
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	4 cut(s)	10, 180, 198, 369
Fsp4HI	GCNGC	3 cut(s)	107, 143, 216
GlaI	GCGC	4 cut(s)	31, 42, 208, 276
GluI	GCNGC	3 cut(s)	107, 143, 216
GsaI	CCCAGC	1 cut(s)	142
HaeII	RGCGCY	2 cut(s)	33, 44
HaeIII	GGCC	3 cut(s)	8, 178, 215
HapII	CCGG	4 cut(s)	33, 44, 72, 184
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	4 cut(s)	32, 43, 209, 277
Hin1I	GRCGYC	5 cut(s)	30, 80, 164, 231, 252
Hin1II	CATG	3 cut(s)	63, 128, 214
Hin6I	GCGC	4 cut(s)	30, 41, 207, 275
HinP1I	GCGC	4 cut(s)	30, 41, 207, 275
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	3 cut(s)	53, 68, 131
HpaII	CCGG	4 cut(s)	33, 44, 72, 184
HphI	GGTGA	2 cut(s)	217, 355
Hpy166II	GTNNAC	2 cut(s)	225, 256
Hpy188I	TCNGA	2 cut(s)	97, 350
Hpy188III	TCNNGA	3 cut(s)	72, 370, 382
Hpy8I	GTNNAC	2 cut(s)	225, 256
Hpy99I	CGWCG	6 cut(s)	97, 169, 233, 254, 257, 260
HpyAV	CCTTC	3 cut(s)	20, 316, 322
HpyCH4IV	ACGT	4 cut(s)	80, 231, 252, 305
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 38, 180, 206, 215, 298
HpySE526I	ACGT	4 cut(s)	80, 231, 252, 305
Hsp92I	GRCGYC	5 cut(s)	30, 80, 164, 231, 252
Hsp92II	CATG	3 cut(s)	63, 128, 214
HspAI	GCGC	4 cut(s)	30, 41, 207, 275
KasI	GGCGCC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	71
KroI	GCCGGC	2 cut(s)	32, 43
KroNI	GCCGGC	2 cut(s)	34, 45
Kzo9I	GATC	3 cut(s)	246, 337, 345
LmnI	GCTCC	2 cut(s)	38, 350
Lsp1109I	GCAGC	2 cut(s)	118, 129
MaeII	ACGT	4 cut(s)	80, 231, 252, 305
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	248, 339, 347
MbiI	CCGCTC	1 cut(s)	393
MboI	GATC	3 cut(s)	246, 337, 345
MboII	GAAGA	1 cut(s)	331
MhlI	GDGCHC	4 cut(s)	10, 180, 198, 369
MluCI	AATT	1 cut(s)	281
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	2 cut(s)	47, 77
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	3 cut(s)	58, 121, 145
MreI	CGCCGGCG	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	71
MroNI	GCCGGC	2 cut(s)	32, 43
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	4 cut(s)	33, 44, 72, 184
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	27, 38, 180, 206, 215, 298
NaeI	GCCGGC	2 cut(s)	34, 45
NarI	GGCGCC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	246, 337, 345
NgoMIV	GCCGGC	2 cut(s)	32, 43
NlaIII	CATG	3 cut(s)	63, 128, 214
NlaIV	GGNNCC	4 cut(s)	7, 8, 31, 178
NmeAIII	GCCGAG	2 cut(s)	35, 140
NmuCI	GTSAC	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 255
PdiI	GCCGGC	2 cut(s)	34, 45
PfeI	GAWTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	108, 144, 217
PleI	GAGTC	2 cut(s)	47, 76
PluTI	GGCGCC	1 cut(s)	33
PpsI	GAGTC	2 cut(s)	47, 76
Psp124BI	GAGCTC	1 cut(s)	369
Psp1406I	AACGTT	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	138
PspN4I	GGNNCC	4 cut(s)	7, 8, 31, 178
PspOMI	GGGCCC	2 cut(s)	6, 176
PspPI	GGNCC	4 cut(s)	6, 7, 176, 177
PstNI	CAGNNNCTG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	369
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	3 cut(s)	107, 143, 216
Sau3AI	GATC	3 cut(s)	246, 337, 345
Sau96I	GGNCC	4 cut(s)	6, 7, 176, 177
SchI	GAGTC	2 cut(s)	47, 77
SduI	GDGCHC	4 cut(s)	10, 180, 198, 369
SfoI	GGCGCC	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	368
SgrAI	CRCCGGYG	1 cut(s)	32
SgrDI	CGTCGACG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	281
SsiI	CCGC	6 cut(s)	36, 174, 198, 205, 216, 391
SspDI	GGCGCC	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	4 cut(s)	83, 234, 255, 308
TaqI	TCGA	5 cut(s)	153, 249, 255, 369, 381
TasI	AATT	1 cut(s)	281
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	106, 142
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	255
ZraI	GACGTC	3 cut(s)	81, 232, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.