Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Reverse (-)

2183961 .. 2184390

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGGGTCGTATCTGTCACGCTATATTGACAACTCGGCAGGGGAGGAGTCCGGAGTGACGTCGTTTCACTCGTCGGAGAGATGGCAGCTTCACTTGAACGCCCATAAGGAATCCTCCCAGCTGCTGGTGGTCGATTTCTCGGCGTCGTGGTGCGGCCCCTGCCGGTTCATAGAGCCCGCCATCCGAGCCATGGCCGCCAAGTTCACCGACGTCCAGTTCGCCAAGATCGACGTCAACGAGCTATCTGTAAGTCCTTCCAAACTTGTGCTAATAATTGAAAGTGCTTTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

98

Amino Acids

10.77

Weight (kDa)

5.48

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	25 - 86	4.8e-14	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	62, 213, 234
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	3 cut(s)	153, 177, 195
AcoI	YGGCCR	1 cut(s)	192
AcyI	GRCGYC	4 cut(s)	59, 143, 210, 231
AfiI	CCNNNNNNNGG	2 cut(s)	124, 190
AgsI	TTSAA	2 cut(s)	97, 278
AluBI	AGCT	3 cut(s)	88, 121, 241
AluI	AGCT	3 cut(s)	88, 121, 241
AlwNI	CAGNNNCTG	1 cut(s)	124
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	154, 192
ApeKI	GCWGC	2 cut(s)	85, 121
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	97, 108
BccI	CCATC	2 cut(s)	75, 188
BisI	GCNGC	4 cut(s)	86, 122, 154, 195
BlsI	GCNGC	4 cut(s)	87, 123, 155, 196
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	157
BsaHI	GRCGYC	4 cut(s)	59, 143, 210, 231
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 190
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	124, 190
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	97, 108
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	2 cut(s)	156, 194
BsiSI	CCGG	2 cut(s)	51, 163
BslI	CCNNNNNNNGG	2 cut(s)	124, 190
BsnI	GGCC	2 cut(s)	156, 194
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	3 cut(s)	153, 177, 195
BspANI	GGCC	2 cut(s)	156, 194
BspEI	TCCGGA	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	225
BssNI	GRCGYC	4 cut(s)	59, 143, 210, 231
BssT1I	CCWWGG	1 cut(s)	189
BstACI	GRCGYC	4 cut(s)	59, 143, 210, 231
BstC8I	GCNNGC	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 185, 194
BstV1I	GCAGC	2 cut(s)	97, 108
BsuRI	GGCC	2 cut(s)	156, 194
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	155
CseI	GACGC	1 cut(s)	132
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	7 cut(s)	88, 121, 156, 175, 188, 194, 241
CviKI_1	RGCY	7 cut(s)	88, 121, 156, 175, 188, 194, 241
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	193
FaiI	YATR	4 cut(s)	24, 105, 170, 191
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	86, 122, 154, 195
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	4 cut(s)	86, 122, 154, 195
GluI	GCNGC	4 cut(s)	86, 122, 154, 195
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	156, 194
HapII	CCGG	2 cut(s)	51, 163
HgaI	GACGC	1 cut(s)	132
Hin1I	GRCGYC	4 cut(s)	59, 143, 210, 231
Hin1II	CATG	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	47, 110
HpaII	CCGG	2 cut(s)	51, 163
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	204, 235
Hpy188I	TCNGA	2 cut(s)	76, 185
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	2 cut(s)	204, 235
Hpy99I	CGWCG	5 cut(s)	64, 76, 148, 212, 233
HpyAV	CCTTC	1 cut(s)	264
HpyCH4IV	ACGT	3 cut(s)	59, 210, 231
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 185, 194
HpySE526I	ACGT	3 cut(s)	59, 210, 231
Hsp92I	GRCGYC	4 cut(s)	59, 143, 210, 231
Hsp92II	CATG	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	7 cut(s)	24, 64, 110, 131, 172, 176, 227
Lsp1109I	GCAGC	2 cut(s)	97, 108
MaeII	ACGT	3 cut(s)	59, 210, 231
MaeIII	GTNAC	2 cut(s)	15, 55
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	37, 124
MroI	TCCGGA	1 cut(s)	50
MseI	TTAA	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	2 cut(s)	51, 163
MwoI	GCNNNNNNNGC	3 cut(s)	159, 185, 194
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	157
NmeAIII	GCCGAG	2 cut(s)	14, 119
NmuCI	GTSAC	2 cut(s)	15, 55
PcsI	WCGNNNNNNNCGW	3 cut(s)	68, 225, 234
PfeI	GAWTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	87, 123, 155, 196
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	292
SatI	GCNGC	4 cut(s)	86, 122, 154, 195
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	6 cut(s)	62, 90, 123, 213, 234, 243
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	3 cut(s)	153, 177, 195
StyI	CCWWGG	1 cut(s)	189
TaiI	ACGT	3 cut(s)	62, 213, 234
TaqI	TCGA	2 cut(s)	132, 228
TasI	AATT	1 cut(s)	273
TauI	GCSGC	2 cut(s)	156, 197
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TseFI	GTSAC	2 cut(s)	15, 55
TseI	GCWGC	2 cut(s)	85, 121
Tsp45I	GTSAC	2 cut(s)	15, 55
TspDTI	ATGAA	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
ZraI	GACGTC	3 cut(s)	60, 211, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.