Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

76765418 .. 76766087

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG591200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGAGCGGTTCTGTCAAGCGTGCTCGGAGCAGGACCAGCCGTCGCCGAGGATGCCGCGCCGGAAGACTCTCGGGTGATGTCGTTTCACTCATCCGCCAGGTGGCAGCTCCACTTCAATTCCATCAAGGACACCTCCAAACTGCTGGTGGTCGATTTCTCGGCGTCGTGGTGCGGGCCCTGCAGGTTCATAGAGCCGGCAATCCACGCCATGGCGGCTAAGTTCACCGACGTCGACTTCGCCAAGATCGACGTCGACGAGCTCTCTGATGTGTCTCAGGAATTTGGGGTGCAGGCAATGCCGACCTTTGTGCTTTTGAAGAACGGGAAGGAGGTGGATCGGGTTGTTGGTGCCAAGAAAGATGAGCTTGAGAAGAAGGTTGAGAAGTACCGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

5.34

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	40 - 128	5.9e-28	Thioredoxin
Thioredoxin_2	PF13098	43 - 124	1.4e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	234, 255
Acc36I	ACCTGC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	8
AccI	GTMKAC	2 cut(s)	234, 255
AccII	CGCG	1 cut(s)	59
AciI	CCGC	5 cut(s)	8, 57, 96, 174, 215
AclWI	GGATC	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	281
AcyI	GRCGYC	3 cut(s)	164, 231, 252
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	102, 211
AgsI	TTSAA	2 cut(s)	118, 319
AhdI	GACNNNNNGTC	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	3 cut(s)	109, 262, 367
AluI	AGCT	3 cut(s)	109, 262, 367
Alw21I	GWGCWC	2 cut(s)	27, 264
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	1 cut(s)	176
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	3 cut(s)	35, 176, 177
AsuHPI	GGTGA	2 cut(s)	88, 217
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	2 cut(s)	180, 264
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	27, 264
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	3 cut(s)	57, 107, 216
BlsI	GCNGC	3 cut(s)	58, 108, 217
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	35
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	3 cut(s)	35, 176, 177
BmiI	GGNNCC	2 cut(s)	178, 352
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	389
BsaHI	GRCGYC	3 cut(s)	164, 231, 252
BsaJI	CCNNGG	2 cut(s)	48, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 211
Bse118I	RCCGGY	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	48, 210
BseGI	GGATG	2 cut(s)	58, 92
BseLI	CCNNNNNNNGG	2 cut(s)	102, 211
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	27, 264
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	62, 197
BslI	CCNNNNNNNGG	2 cut(s)	102, 211
BsmAI	GTCTC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	72
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	3 cut(s)	27, 180, 264
Bsp143I	GATC	2 cut(s)	246, 337
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	5 cut(s)	8, 57, 96, 174, 215
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	178, 352
BspMAI	CTGCAG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	48, 210
BssMI	GATC	2 cut(s)	246, 337
BssNI	GRCGYC	3 cut(s)	164, 231, 252
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	392
BstACI	GRCGYC	3 cut(s)	164, 231, 252
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	4 cut(s)	23, 176, 198, 294
BstDEI	CTNAG	2 cut(s)	219, 276
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	58, 92
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	249, 340
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	246, 337
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 53, 180, 206, 215, 298
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	58, 92
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	4 cut(s)	23, 176, 198, 294
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	35, 176, 177
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	41, 109, 178, 196, 218, 262, 367
CviKI_1	RGCY	7 cut(s)	41, 109, 178, 196, 218, 262, 367
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	219, 276
DpnI	GATC	2 cut(s)	248, 339
DpnII	GATC	2 cut(s)	246, 337
DriI	GACNNNNNGTC	1 cut(s)	41
Eam1105I	GACNNNNNGTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	2 cut(s)	180, 264
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	2 cut(s)	180, 264
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	191, 212
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	2 cut(s)	234, 255
Fnu4HI	GCNGC	3 cut(s)	57, 107, 216
FokI	GGATG	2 cut(s)	65, 79
FriOI	GRGCYC	2 cut(s)	180, 264
Fsp4HI	GCNGC	3 cut(s)	57, 107, 216
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	3 cut(s)	57, 107, 216
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	62, 197
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	3 cut(s)	164, 231, 252
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	2 cut(s)	235, 256
HindII	GTYRAC	2 cut(s)	235, 256
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	2 cut(s)	62, 197
HphI	GGTGA	2 cut(s)	88, 217
Hpy166II	GTNNAC	4 cut(s)	225, 235, 256, 395
Hpy188I	TCNGA	2 cut(s)	29, 268
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	4 cut(s)	225, 235, 256, 395
Hpy99I	CGWCG	7 cut(s)	47, 169, 233, 236, 254, 257, 260
HpyAV	CCTTC	2 cut(s)	322, 370
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	2 cut(s)	231, 252
HpyCH4V	TGCA	2 cut(s)	183, 292
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 53, 180, 206, 215, 298
HpyF3I	CTNAG	2 cut(s)	219, 276
HpySE526I	ACGT	2 cut(s)	231, 252
Hsp92I	GRCGYC	3 cut(s)	164, 231, 252
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	59
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	246, 337
LmnI	GCTCC	3 cut(s)	5, 29, 114
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	2 cut(s)	231, 252
MalI	GATC	2 cut(s)	248, 339
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	2 cut(s)	246, 337
MboII	GAAGA	3 cut(s)	77, 331, 385
MhlI	GDGCHC	3 cut(s)	27, 180, 264
MluCI	AATT	2 cut(s)	118, 281
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	3 cut(s)	43, 145, 325
MroNI	GCCGGC	1 cut(s)	196
MspI	CCGG	2 cut(s)	62, 197
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	6 cut(s)	38, 53, 180, 206, 215, 298
NaeI	GCCGGC	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	246, 337
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	2 cut(s)	178, 352
NmeAIII	GCCGAG	2 cut(s)	73, 140
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 255
PdiI	GCCGGC	1 cut(s)	198
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	58, 108, 217
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	178, 352
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	3 cut(s)	35, 176, 177
PstI	CTGCAG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SacI	GAGCTC	1 cut(s)	264
SalI	GTCGAC	2 cut(s)	233, 254
SatI	GCNGC	3 cut(s)	57, 107, 216
Sau3AI	GATC	2 cut(s)	246, 337
Sau96I	GGNCC	3 cut(s)	35, 176, 177
SbfI	CCTGCAGG	1 cut(s)	185
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	100
SdaI	CCTGCAGG	1 cut(s)	185
SduI	GDGCHC	3 cut(s)	27, 180, 264
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	181
SgrDI	CGTCGACG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse8387I	CCTGCAGG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	118, 281
SsiI	CCGC	5 cut(s)	8, 57, 96, 174, 215
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	2 cut(s)	234, 255
TaqI	TCGA	4 cut(s)	153, 234, 249, 255
TasI	AATT	2 cut(s)	118, 281
TauI	GCSGC	2 cut(s)	59, 218
TseI	GCWGC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	2 cut(s)	234, 255
ZraI	GACGTC	2 cut(s)	232, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.