Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

36996996 .. 36997852

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGATCGTTTCTGTCAAGCTTGCTTGGAGCAGGGCCGGCGGCGGCGGATGACTCGGCGGAGTCATCGGAGAAGTCTCGAGTGACGTCGTTTCACTCGGCTGCCAGGTGGCAGCTCCACTTGAAGGAATTCAAGGACACCTCCAAACTGCTGGTGATCGATTTCTCGGCGTCGTGGTGCGGGCCCTGCAAGTTCATTGAGCCGGCCATCCACGCCATGGCGGAGAAGTTCACCGACGTTGACTTCGCCAAGATCGACGTCGACGAGCTATCTGAAGTGTCTCAAGAGTTTGGGGTGCAGGCAATGCCGACCTTTGTGCTTTTGAAGAATGGGAAGGAGGTGGATCGGGTTGTTGGTGCCAAGAAAGATGAACTTGAGAAGAAGGTTGAGAAGCACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

134

Amino Acids

14.68

Weight (kDa)

5.57

Isoelectric Point (pI)

24.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	42 - 130	5.3e-28	Thioredoxin
Thioredoxin_2	PF13098	46 - 126	1.1e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	89, 261
AccB1I	GGYRCC	1 cut(s)	356
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	7 cut(s)	41, 44, 47, 59, 180, 221, 397
AclWI	GGATC	2 cut(s)	13, 351
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	3 cut(s)	86, 170, 258
AfiI	CCNNNNNNNGG	2 cut(s)	124, 217
AgsI	TTSAA	3 cut(s)	124, 133, 325
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	3 cut(s)	21, 115, 268
AluI	AGCT	3 cut(s)	21, 115, 268
Alw26I	GTCTC	2 cut(s)	81, 285
AlwI	GGATC	2 cut(s)	13, 351
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	3 cut(s)	35, 182, 204
ApaI	GGGCCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	101, 112
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	35, 182, 183
AsuHPI	GGTGA	2 cut(s)	166, 223
AvaI	CYCGRG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	88, 124
BccI	CCATC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	81, 285
BisI	GCNGC	4 cut(s)	42, 45, 102, 113
BlsI	GCNGC	4 cut(s)	43, 46, 103, 114
Bme1390I	CCNGG	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	3 cut(s)	35, 182, 183
BmiI	GGNNCC	2 cut(s)	184, 358
BmrFI	CCNGG	1 cut(s)	106
BpuEI	CTTGAG	2 cut(s)	267, 395
Bsa29I	ATCGAT	1 cut(s)	159
BsaHI	GRCGYC	3 cut(s)	86, 170, 258
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 217
Bse118I	RCCGGY	2 cut(s)	37, 202
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	55, 207
BseLI	CCNNNNNNNGG	2 cut(s)	124, 217
BseMI	GCAATG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	88, 124
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	37, 184, 206
BshNI	GGYRCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	38, 203
BslI	CCNNNNNNNGG	2 cut(s)	124, 217
BsmAI	GTCTC	2 cut(s)	81, 285
BsnI	GGCC	3 cut(s)	37, 184, 206
BsoBI	CYCGRG	1 cut(s)	78
Bsp120I	GGGCCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	5, 156, 252, 343
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	7 cut(s)	41, 44, 47, 59, 180, 221, 397
BspANI	GGCC	3 cut(s)	37, 184, 206
BspDI	ATCGAT	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	184, 358
BspPI	GGATC	2 cut(s)	13, 351
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	2 cut(s)	37, 202
BssAI	RCCGGY	2 cut(s)	37, 202
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	4 cut(s)	5, 156, 252, 343
BssNI	GRCGYC	3 cut(s)	86, 170, 258
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	106
BstACI	GRCGYC	3 cut(s)	86, 170, 258
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstC8I	GCNNGC	5 cut(s)	23, 39, 182, 204, 300
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	55, 207
BstKTI	GATC	4 cut(s)	8, 159, 255, 346
BstMAI	GTCTC	2 cut(s)	81, 285
BstMBI	GATC	4 cut(s)	5, 156, 252, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 186, 212, 304
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	88, 124
BstXI	CCANNNNNNTGG	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	37, 184, 206
BsuTUI	ATCGAT	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	55, 207
Cac8I	GCNNGC	5 cut(s)	23, 39, 182, 204, 300
Cfr10I	RCCGGY	2 cut(s)	37, 202
Cfr13I	GGNCC	3 cut(s)	35, 182, 183
ClaI	ATCGAT	1 cut(s)	159
CseI	GACGC	1 cut(s)	159
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	8 cut(s)	21, 37, 101, 115, 184, 202, 206, 268
CviKI_1	RGCY	8 cut(s)	21, 37, 101, 115, 184, 202, 206, 268
DpnI	GATC	4 cut(s)	7, 158, 254, 345
DpnII	GATC	4 cut(s)	5, 156, 252, 343
EaeI	YGGCCR	1 cut(s)	204
EciI	GGCGGA	3 cut(s)	62, 74, 236
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	220
FaiI	YATR	1 cut(s)	218
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	4 cut(s)	42, 45, 102, 113
FokI	GGATG	2 cut(s)	62, 194
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	4 cut(s)	42, 45, 102, 113
GluI	GCNGC	4 cut(s)	42, 45, 102, 113
HaeIII	GGCC	3 cut(s)	37, 184, 206
HapII	CCGG	2 cut(s)	38, 203
HgaI	GACGC	1 cut(s)	159
Hin1I	GRCGYC	3 cut(s)	86, 170, 258
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	2 cut(s)	241, 262
HindII	GTYRAC	2 cut(s)	241, 262
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	2 cut(s)	53, 62
HpaII	CCGG	2 cut(s)	38, 203
HphI	GGTGA	2 cut(s)	166, 223
Hpy166II	GTNNAC	3 cut(s)	231, 241, 262
Hpy188I	TCNGA	2 cut(s)	70, 274
Hpy188III	TCNNGA	2 cut(s)	78, 284
Hpy8I	GTNNAC	3 cut(s)	231, 241, 262
Hpy99I	CGWCG	6 cut(s)	91, 175, 239, 260, 263, 266
HpyAV	CCTTC	3 cut(s)	118, 328, 376
HpyCH4IV	ACGT	3 cut(s)	86, 237, 258
HpyCH4V	TGCA	2 cut(s)	189, 298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 186, 212, 304
HpySE526I	ACGT	3 cut(s)	86, 237, 258
Hsp92I	GRCGYC	3 cut(s)	86, 170, 258
Hsp92II	CATG	1 cut(s)	220
KroI	GCCGGC	2 cut(s)	37, 202
KroNI	GCCGGC	2 cut(s)	39, 204
Kzo9I	GATC	4 cut(s)	5, 156, 252, 343
LmnI	GCTCC	2 cut(s)	29, 120
LpnPI	CCDG	8 cut(s)	18, 51, 91, 118, 137, 199, 216, 284
Lsp1109I	GCAGC	2 cut(s)	88, 124
MaeII	ACGT	3 cut(s)	86, 237, 258
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	4 cut(s)	7, 158, 254, 345
MboI	GATC	4 cut(s)	5, 156, 252, 343
MboII	GAAGA	2 cut(s)	337, 391
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	47, 71
MnlI	CCTC	2 cut(s)	151, 331
MroNI	GCCGGC	2 cut(s)	37, 202
MroXI	GAANNNNTTC	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	2 cut(s)	38, 203
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	4 cut(s)	38, 186, 212, 304
NaeI	GCCGGC	2 cut(s)	39, 204
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	4 cut(s)	5, 156, 252, 343
NgoMIV	GCCGGC	2 cut(s)	37, 202
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	184, 358
NmeAIII	GCCGAG	3 cut(s)	35, 77, 146
NmuCI	GTSAC	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 261
PdiI	GCCGGC	2 cut(s)	39, 204
PdmI	GAANNNNTTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	4 cut(s)	43, 46, 103, 114
PleI	GAGTC	2 cut(s)	47, 70
PpsI	GAGTC	2 cut(s)	47, 70
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	184, 358
PspOMI	GGGCCC	1 cut(s)	182
PspPI	GGNCC	3 cut(s)	35, 182, 183
SalI	GTCGAC	1 cut(s)	260
SatI	GCNGC	4 cut(s)	42, 45, 102, 113
Sau3AI	GATC	4 cut(s)	5, 156, 252, 343
Sau96I	GGNCC	3 cut(s)	35, 182, 183
SchI	GAGTC	2 cut(s)	47, 71
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	78
SgrDI	CGTCGACG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	78
SmlI	CTYRAG	3 cut(s)	78, 282, 374
SmoI	CTYRAG	3 cut(s)	78, 282, 374
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	7 cut(s)	41, 44, 47, 59, 180, 221, 397
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	216
TaiI	ACGT	3 cut(s)	89, 240, 261
TaqI	TCGA	4 cut(s)	79, 159, 255, 261
TasI	AATT	1 cut(s)	128
TauI	GCSGC	2 cut(s)	44, 47
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	101, 112
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	184, 384
Van91I	CCANNNNNTGG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	128
ZraI	GACGTC	2 cut(s)	87, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.