Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

5690635 .. 5692547

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1080800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGAGGTAACACGTCACACTTTGAAGACTCGGATGAATCTCCACTTGAACACATGTCTCGCATCGTGGCCTTCCATTCCCAGGACCAATGGAACACCCACTTTGCTGCCGTCAAAGACAGCAATAAACTGATGGTGATTGATTTCACGGCTAAATGGTGTGGACCTTGTAGAGCCATGGAACCAATCTTCAGAGAGTACGCTAATAAATTCACCGACGTTGAGTTCGTCAAGCTTGATGTCGACGAGCTATCGGATGTGGCAGTGGAGTTTAGTGTGGAGGCAATGCCTTCATTTGTGTTCGTGAAGAATGGGGAGGTGGTTGATAAGGTCGTGGGGGCCAGGAAAGATGAACTGCAGAAGAAGATTGAGAAACACAGGAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

130

Amino Acids

14.76

Weight (kDa)

5.33

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	33 - 125	3e-29	Thioredoxin
Thioredoxin_2	PF13098	39 - 120	8.1e-06	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	2 cut(s)	12, 54
AgsI	TTSAA	2 cut(s)	26, 50
AjiI	CACGTC	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	81, 341
AluBI	AGCT	2 cut(s)	235, 250
AluI	AGCT	2 cut(s)	235, 250
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	69, 339
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	3 cut(s)	85, 164, 339
AsuHPI	GGTGA	2 cut(s)	148, 205
AvaII	GGWCC	2 cut(s)	85, 164
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	2 cut(s)	95, 165
BciT130I	CCWGG	2 cut(s)	83, 343
BcoDI	GTCTC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	83, 343
Bme18I	GGWCC	2 cut(s)	85, 164
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	3 cut(s)	85, 164, 339
BmiI	GGNNCC	2 cut(s)	183, 340
BmrFI	CCNGG	2 cut(s)	83, 343
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	81, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	83, 343
BseDI	CCNNGG	2 cut(s)	81, 177
BseGI	GGATG	2 cut(s)	40, 262
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	94
BshFI	GGCC	2 cut(s)	71, 341
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	71, 341
Bsp19I	CCATGG	1 cut(s)	177
BspANI	GGCC	2 cut(s)	71, 341
BspLI	GGNNCC	2 cut(s)	183, 340
BspMAI	CTGCAG	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	81, 177
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	83, 343
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	40, 262
BstMAI	GTCTC	1 cut(s)	63
BstNI	CCWGG	2 cut(s)	83, 343
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	81, 341
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	71, 341
BtgI	CCRYGG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	40, 262
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cfr13I	GGNCC	3 cut(s)	85, 164, 339
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	55, 178
CviJI	RGCY	6 cut(s)	71, 152, 176, 235, 250, 341
CviKI_1	RGCY	6 cut(s)	71, 152, 176, 235, 250, 341
CviQI	GTAC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	85, 164
Eco57I	CTGAAG	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	81, 341
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	58, 181
FaiI	YATR	3 cut(s)	56, 179, 388
FatI	CATG	2 cut(s)	54, 177
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	2 cut(s)	47, 269
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	71, 341
Hin1II	CATG	2 cut(s)	58, 181
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	29, 38
HphI	GGTGA	2 cut(s)	148, 205
Hpy166II	GTNNAC	2 cut(s)	164, 244
Hpy188I	TCNGA	3 cut(s)	34, 194, 256
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	2 cut(s)	164, 244
Hpy99I	CGWCG	2 cut(s)	221, 248
HpyAV	CCTTC	2 cut(s)	82, 300
HpyCH4IV	ACGT	2 cut(s)	14, 219
HpyCH4V	TGCA	1 cut(s)	358
HpySE526I	ACGT	2 cut(s)	14, 219
Hsp92II	CATG	2 cut(s)	58, 181
LpnPI	CCDG	5 cut(s)	68, 95, 328, 355, 364
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	2 cut(s)	14, 219
MaeIII	GTNAC	2 cut(s)	8, 15
MboII	GAAGA	5 cut(s)	38, 181, 319, 373, 376
MluCI	AATT	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	274, 310
MspR9I	CCNGG	2 cut(s)	83, 343
MvaI	CCWGG	2 cut(s)	83, 343
NcoI	CCATGG	1 cut(s)	177
NlaIII	CATG	2 cut(s)	58, 181
NlaIV	GGNNCC	2 cut(s)	183, 340
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	81, 341
PspGI	CCWGG	2 cut(s)	81, 341
PspN4I	GGNNCC	2 cut(s)	183, 340
PspPI	GGNCC	3 cut(s)	85, 164, 339
PstI	CTGCAG	1 cut(s)	360
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SalI	GTCGAC	1 cut(s)	242
SatI	GCNGC	1 cut(s)	108
Sau96I	GGNCC	3 cut(s)	85, 164, 339
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	83, 343
SetI	ASST	8 cut(s)	10, 17, 169, 222, 237, 252, 321, 333
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	2 cut(s)	85, 164
Sse9I	AATT	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	81, 341
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	2 cut(s)	17, 222
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	51, 282, 366
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	2 cut(s)	85, 164
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.