Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

25260314 .. 25261373

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G272400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGGTCGTTTCTGTCAAGCCTACTTGGAGGATCGCCGGCGTACGACTCAGCCGCGTCATCGGAGGACTCTCGGGTGACGTCGTTTCACTCATCCGCCAGATGGCAGCTTCACTTCAATTCCCACAAGGATTCTTCCCAGCTGCTGGTGATCGATTTCTCGGCGTCGTGGTGCGGACCCTGCAGGCTCATAGAGCCGGCCGTCCACTACATGTCCACCCAGTTCACCGACGTTGACTTCGCCAAGATCGACGTCGACGAGTTGTCTGAGGTGGCACAGGAATTTGGAGTGCAGGCAATGCCGACGTTTGTGCTGTTGAAGAAAGGGAAGGAAGTGGATCGAGTGATCGGTGCCAGAAAGGATGAGCTTGAGAAGAAGATTCAAAAGTACCAGTCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

134

Amino Acids

14.81

Weight (kDa)

5.5

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	83, 255
AccB1I	GGYRCC	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	56
AciI	CCGC	3 cut(s)	54, 96, 174
AclWI	GGATC	2 cut(s)	40, 345
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	281
AcyI	GRCGYC	3 cut(s)	80, 164, 252
AfaI	GTAC	2 cut(s)	44, 389
AfiI	CCNNNNNNNGG	2 cut(s)	102, 145
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	118, 319, 383
AhdI	GACNNNNNGTC	1 cut(s)	262
AluBI	AGCT	3 cut(s)	109, 142, 367
AluI	AGCT	3 cut(s)	109, 142, 367
AlwI	GGATC	2 cut(s)	40, 345
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	106, 142
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	88, 160, 217
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	118, 129
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	3 cut(s)	54, 107, 143
BlsI	GCNGC	3 cut(s)	55, 108, 144
Bme18I	GGWCC	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	178, 352
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	153
BsaHI	GRCGYC	3 cut(s)	80, 164, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 145
Bse118I	RCCGGY	2 cut(s)	37, 196
Bse1I	ACTGG	2 cut(s)	220, 391
Bse3DI	GCAATG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	153
BseGI	GGATG	2 cut(s)	92, 367
BseLI	CCNNNNNNNGG	2 cut(s)	102, 145
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	63, 258
BseNI	ACTGG	2 cut(s)	220, 391
BseX3I	CGGCCG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	118, 129
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	38, 197
BsiWI	CGTACG	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	102, 145
BsnI	GGCC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	32, 150, 246, 337, 345
BspACI	CCGC	3 cut(s)	54, 96, 174
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	62, 259
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	2 cut(s)	178, 352
BspMAI	CTGCAG	1 cut(s)	185
BspPI	GGATC	2 cut(s)	40, 345
BspT107I	GGYRCC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	2 cut(s)	37, 196
BsrI	ACTGG	2 cut(s)	220, 391
BssAI	RCCGGY	2 cut(s)	37, 196
BssMI	GATC	5 cut(s)	32, 150, 246, 337, 345
BssNI	GRCGYC	3 cut(s)	80, 164, 252
BstACI	GRCGYC	3 cut(s)	80, 164, 252
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	4 cut(s)	39, 185, 198, 294
BstDEI	CTNAG	2 cut(s)	49, 267
BstF5I	GGATG	2 cut(s)	92, 367
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	5 cut(s)	35, 153, 249, 340, 348
BstMBI	GATC	5 cut(s)	32, 150, 246, 337, 345
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 193, 298
BstNSI	RCATGY	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	118, 129
BstZI	CGGCCG	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	92, 367
Cac8I	GCNNGC	4 cut(s)	39, 185, 198, 294
CaiI	CAGNNNCTG	1 cut(s)	145
Cfr10I	RCCGGY	2 cut(s)	37, 196
Cfr13I	GGNCC	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	2 cut(s)	45, 153
Csp6I	GTAC	2 cut(s)	43, 388
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	8 cut(s)	21, 53, 109, 142, 187, 196, 200, 367
CviKI_1	RGCY	8 cut(s)	21, 53, 109, 142, 187, 196, 200, 367
CviQI	GTAC	2 cut(s)	43, 388
DdeI	CTNAG	2 cut(s)	49, 267
DpnI	GATC	5 cut(s)	34, 152, 248, 339, 347
DpnII	GATC	5 cut(s)	32, 150, 246, 337, 345
DriI	GACNNNNNGTC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	198
EagI	CGGCCG	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	85
EclXI	CGGCCG	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	176
Eco52I	CGGCCG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	72
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	191, 212
FatI	CATG	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	54, 107, 143
FokI	GGATG	2 cut(s)	79, 374
Fsp4HI	GCNGC	3 cut(s)	54, 107, 143
GluI	GCNGC	3 cut(s)	54, 107, 143
GsaI	CCCAGC	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	2 cut(s)	38, 197
HgaI	GACGC	2 cut(s)	45, 153
Hin1I	GRCGYC	3 cut(s)	80, 164, 252
Hin1II	CATG	1 cut(s)	214
HincII	GTYRAC	2 cut(s)	235, 256
HindII	GTYRAC	2 cut(s)	235, 256
HinfI	GANTC	4 cut(s)	47, 68, 131, 379
HpaII	CCGG	2 cut(s)	38, 197
HphI	GGTGA	3 cut(s)	88, 160, 217
Hpy166II	GTNNAC	5 cut(s)	205, 216, 225, 235, 256
Hpy188I	TCNGA	2 cut(s)	64, 268
Hpy8I	GTNNAC	5 cut(s)	205, 216, 225, 235, 256
Hpy99I	CGWCG	7 cut(s)	85, 169, 233, 254, 257, 260, 307
HpyAV	CCTTC	1 cut(s)	322
HpyCH4IV	ACGT	4 cut(s)	80, 231, 252, 305
HpyCH4V	TGCA	2 cut(s)	183, 292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 193, 298
HpyF3I	CTNAG	2 cut(s)	49, 267
HpySE526I	ACGT	4 cut(s)	80, 231, 252, 305
Hsp92I	GRCGYC	3 cut(s)	80, 164, 252
Hsp92II	CATG	1 cut(s)	214
KroI	GCCGGC	2 cut(s)	37, 196
KroNI	GCCGGC	2 cut(s)	39, 198
Kzo9I	GATC	5 cut(s)	32, 150, 246, 337, 345
Lsp1109I	GCAGC	2 cut(s)	118, 129
MaeII	ACGT	4 cut(s)	80, 231, 252, 305
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	5 cut(s)	34, 152, 248, 339, 347
MboI	GATC	5 cut(s)	32, 150, 246, 337, 345
MboII	GAAGA	4 cut(s)	126, 331, 385, 388
MluCI	AATT	2 cut(s)	118, 281
MlyI	GAGTC	2 cut(s)	41, 62
MnlI	CCTC	3 cut(s)	23, 58, 262
MreI	CGCCGGCG	1 cut(s)	37
MroNI	GCCGGC	2 cut(s)	37, 196
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	2 cut(s)	38, 197
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	180, 193, 298
NaeI	GCCGGC	2 cut(s)	39, 198
NdeII	GATC	5 cut(s)	32, 150, 246, 337, 345
NgoMIV	GCCGGC	2 cut(s)	37, 196
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	2 cut(s)	178, 352
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	214
PciI	ACATGT	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 255
PdiI	GCCGGC	2 cut(s)	39, 198
PfeI	GAWTC	2 cut(s)	131, 379
Pfl23II	CGTACG	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	55, 108, 144
PleI	GAGTC	2 cut(s)	41, 62
PpsI	GAGTC	2 cut(s)	41, 62
PscI	ACATGT	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	138
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	178, 352
PspPI	GGNCC	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	2 cut(s)	44, 389
RsaNI	GTAC	2 cut(s)	43, 388
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	3 cut(s)	54, 107, 143
Sau3AI	GATC	5 cut(s)	32, 150, 246, 337, 345
Sau96I	GGNCC	1 cut(s)	176
SbfI	CCTGCAGG	1 cut(s)	185
SchI	GAGTC	2 cut(s)	41, 62
SdaI	CCTGCAGG	1 cut(s)	185
SetI	ASST	8 cut(s)	83, 111, 144, 234, 255, 273, 308, 369
SfcI	CTRYAG	1 cut(s)	181
SgrAI	CRCCGGYG	1 cut(s)	37
SgrDI	CGTCGACG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse8387I	CCTGCAGG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	118, 281
SsiI	CCGC	3 cut(s)	54, 96, 174
TaiI	ACGT	4 cut(s)	83, 234, 255, 308
TaqI	TCGA	4 cut(s)	153, 249, 255, 340
TasI	AATT	2 cut(s)	118, 281
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	131, 379
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	106, 142
Tsp45I	GTSAC	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	255
ZraI	GACGTC	2 cut(s)	81, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.