Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

83637429 .. 83638076

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG609800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGATCGATTCTGTCAAGCTTTGTCGGAGGATCGCCGGCGGAGGACTCCGCCGCGTCGTCGGAAGACTCTCGGGTGATGTCGTTTCACTCATCCGCCAGGTGGCAGCTCCACTTCAATTCCATCAAGGACACCTCCAAACTGCTGGTGATCGATTTCTCGGCGTCGTGGTGCGGGCCCTGCAGGTTCATAGAGCCGGCCATCCGCGCCATGGCGGATAAGTTCACCGACGTCGACTTCGCCAAGATCGACGTCGACGAGCTCTCTGATGTGTCTCAGGAATTTGGGGTGCAGGCAATGCCGACCTTTGTGCTTTTGAAGAACGGGAAAGAGGTGGATCGGGTTGTTGGTGCCAAGAAAGATGAGCTCGAGAAGAAGGTTCAGAAGTACCGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

133

Amino Acids

14.71

Weight (kDa)

5.37

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	40 - 128	8.6e-28	Thioredoxin
Thioredoxin_2	PF13098	43 - 124	1.3e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	234, 255
Acc36I	ACCTGC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	350
AccI	GTMKAC	2 cut(s)	234, 255
AccII	CGCG	2 cut(s)	56, 207
AciI	CCGC	7 cut(s)	41, 51, 54, 96, 174, 205, 215
AclWI	GGATC	3 cut(s)	13, 40, 345
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	281
AcyI	GRCGYC	3 cut(s)	164, 231, 252
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	102, 211
AgsI	TTSAA	2 cut(s)	118, 319
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	4 cut(s)	21, 109, 262, 367
AluI	AGCT	4 cut(s)	21, 109, 262, 367
Alw21I	GWGCWC	2 cut(s)	264, 369
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	3 cut(s)	13, 40, 345
Ama87I	CYCGRG	2 cut(s)	72, 368
AoxI	GGCC	2 cut(s)	176, 198
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	176, 177
AsuHPI	GGTGA	3 cut(s)	88, 160, 217
AvaI	CYCGRG	2 cut(s)	72, 368
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	3 cut(s)	180, 264, 369
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	264, 369
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	131, 209
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	54, 107
BlsI	GCNGC	2 cut(s)	55, 108
Bme1390I	CCNGG	1 cut(s)	100
BmeT110I	CYCGRG	2 cut(s)	72, 368
BmgT120I	GGNCC	2 cut(s)	176, 177
BmiI	GGNNCC	2 cut(s)	178, 352
BmrFI	CCNGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	72
Bsa29I	ATCGAT	2 cut(s)	8, 153
BsaHI	GRCGYC	3 cut(s)	164, 231, 252
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 211
Bse118I	RCCGGY	2 cut(s)	37, 196
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	100
BseCI	ATCGAT	2 cut(s)	8, 153
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	92, 201
BseLI	CCNNNNNNNGG	2 cut(s)	102, 211
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	56, 207
BshFI	GGCC	2 cut(s)	178, 200
BshNI	GGYRCC	1 cut(s)	350
BshVI	ATCGAT	2 cut(s)	8, 153
BsiHKAI	GWGCWC	2 cut(s)	264, 369
BsiHKCI	CYCGRG	2 cut(s)	72, 368
BsiSI	CCGG	2 cut(s)	38, 197
BslI	CCNNNNNNNGG	2 cut(s)	102, 211
BsmAI	GTCTC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	178, 200
BsoBI	CYCGRG	2 cut(s)	72, 368
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	3 cut(s)	180, 264, 369
Bsp143I	GATC	5 cut(s)	5, 32, 150, 246, 337
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	7 cut(s)	41, 51, 54, 96, 174, 205, 215
BspANI	GGCC	2 cut(s)	178, 200
BspCNI	CTCAG	1 cut(s)	289
BspDI	ATCGAT	2 cut(s)	8, 153
BspFNI	CGCG	2 cut(s)	56, 207
BspLI	GGNNCC	2 cut(s)	178, 352
BspMAI	CTGCAG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	3 cut(s)	13, 40, 345
BspT107I	GGYRCC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	2 cut(s)	37, 196
BssAI	RCCGGY	2 cut(s)	37, 196
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	5 cut(s)	5, 32, 150, 246, 337
BssNI	GRCGYC	3 cut(s)	164, 231, 252
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	392
BstACI	GRCGYC	3 cut(s)	164, 231, 252
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	4 cut(s)	39, 176, 198, 294
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	92, 201
BstFNI	CGCG	2 cut(s)	56, 207
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	5 cut(s)	8, 35, 153, 249, 340
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	5 cut(s)	5, 32, 150, 246, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 206, 298
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	2 cut(s)	56, 207
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	145
Bsu15I	ATCGAT	2 cut(s)	8, 153
BsuRI	GGCC	2 cut(s)	178, 200
BsuTUI	ATCGAT	2 cut(s)	8, 153
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	92, 201
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	4 cut(s)	39, 176, 198, 294
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	2 cut(s)	37, 196
Cfr13I	GGNCC	2 cut(s)	176, 177
ClaI	ATCGAT	2 cut(s)	8, 153
CseI	GACGC	2 cut(s)	45, 153
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	21, 109, 178, 196, 200, 262, 367
CviKI_1	RGCY	7 cut(s)	21, 109, 178, 196, 200, 262, 367
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	5 cut(s)	7, 34, 152, 248, 339
DpnII	GATC	5 cut(s)	5, 32, 150, 246, 337
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	4 cut(s)	40, 56, 85, 230
Ecl136II	GAGCTC	2 cut(s)	262, 367
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	3 cut(s)	180, 264, 369
Eco53kI	GAGCTC	2 cut(s)	262, 367
Eco88I	CYCGRG	2 cut(s)	72, 368
EcoICRI	GAGCTC	2 cut(s)	262, 367
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	3 cut(s)	180, 264, 369
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	191, 212
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	2 cut(s)	234, 255
Fnu4HI	GCNGC	2 cut(s)	54, 107
FokI	GGATG	2 cut(s)	79, 188
FriOI	GRGCYC	3 cut(s)	180, 264, 369
Fsp4HI	GCNGC	2 cut(s)	54, 107
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	2 cut(s)	54, 107
HaeIII	GGCC	2 cut(s)	178, 200
HapII	CCGG	2 cut(s)	38, 197
HgaI	GACGC	2 cut(s)	45, 153
HhaI	GCGC	1 cut(s)	209
Hin1I	GRCGYC	3 cut(s)	164, 231, 252
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	2 cut(s)	235, 256
HindII	GTYRAC	2 cut(s)	235, 256
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	3 cut(s)	10, 47, 68
HpaII	CCGG	2 cut(s)	38, 197
HphI	GGTGA	3 cut(s)	88, 160, 217
Hpy166II	GTNNAC	4 cut(s)	225, 235, 256, 395
Hpy188I	TCNGA	4 cut(s)	29, 64, 268, 384
Hpy188III	TCNNGA	2 cut(s)	278, 370
Hpy8I	GTNNAC	4 cut(s)	225, 235, 256, 395
Hpy99I	CGWCG	8 cut(s)	61, 64, 169, 233, 236, 254, 257, 260
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	2 cut(s)	231, 252
HpyCH4V	TGCA	2 cut(s)	183, 292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 206, 298
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	2 cut(s)	231, 252
Hsp92I	GRCGYC	3 cut(s)	164, 231, 252
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	207
KroI	GCCGGC	2 cut(s)	37, 196
KroNI	GCCGGC	2 cut(s)	39, 198
Kzo9I	GATC	5 cut(s)	5, 32, 150, 246, 337
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	9 cut(s)	51, 85, 112, 131, 169, 193, 210, 263, 278
Lsp1109I	GCAGC	1 cut(s)	118
MaeII	ACGT	2 cut(s)	231, 252
MalI	GATC	5 cut(s)	7, 34, 152, 248, 339
MboI	GATC	5 cut(s)	5, 32, 150, 246, 337
MboII	GAAGA	3 cut(s)	77, 331, 385
MhlI	GDGCHC	3 cut(s)	180, 264, 369
MluCI	AATT	2 cut(s)	118, 281
MlyI	GAGTC	2 cut(s)	41, 62
MmeI	TCCRAC	2 cut(s)	7, 42
MnlI	CCTC	4 cut(s)	23, 37, 145, 325
MreI	CGCCGGCG	1 cut(s)	37
MroNI	GCCGGC	2 cut(s)	37, 196
MspI	CCGG	2 cut(s)	38, 197
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	2 cut(s)	56, 207
MwoI	GCNNNNNNNGC	3 cut(s)	180, 206, 298
NaeI	GCCGGC	2 cut(s)	39, 198
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	5 cut(s)	5, 32, 150, 246, 337
NgoMIV	GCCGGC	2 cut(s)	37, 196
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	2 cut(s)	178, 352
NmeAIII	GCCGAG	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 255
PdiI	GCCGGC	2 cut(s)	39, 198
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	55, 108
PleI	GAGTC	2 cut(s)	41, 62
PpsI	GAGTC	2 cut(s)	41, 62
Psp124BI	GAGCTC	2 cut(s)	264, 369
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	178, 352
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	176, 177
PstI	CTGCAG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SacI	GAGCTC	2 cut(s)	264, 369
SalI	GTCGAC	2 cut(s)	233, 254
SatI	GCNGC	2 cut(s)	54, 107
Sau3AI	GATC	5 cut(s)	5, 32, 150, 246, 337
Sau96I	GGNCC	2 cut(s)	176, 177
SbfI	CCTGCAGG	1 cut(s)	185
SchI	GAGTC	2 cut(s)	41, 62
ScrFI	CCNGG	1 cut(s)	100
SdaI	CCTGCAGG	1 cut(s)	185
SduI	GDGCHC	3 cut(s)	180, 264, 369
SfcI	CTRYAG	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	368
SgrAI	CRCCGGYG	1 cut(s)	37
SgrDI	CGTCGACG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse8387I	CCTGCAGG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	118, 281
SsiI	CCGC	7 cut(s)	41, 51, 54, 96, 174, 205, 215
SstI	GAGCTC	2 cut(s)	264, 369
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	2 cut(s)	234, 255
TaqI	TCGA	6 cut(s)	8, 153, 234, 249, 255, 369
TasI	AATT	2 cut(s)	118, 281
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	178
XapI	RAATTY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	2 cut(s)	234, 255
ZraI	GACGTC	2 cut(s)	232, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.