Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Reverse (-)

15990687 .. 15991978

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGAGGAGCTTTATCAACTGTGTTTGGAAGTGGAGAAGATGCAACAGCTGCAGGGACCGAATCTGAGCCAAGTCGCGTCCTAAAGTTTAGCTCTTCCGCTCGGTGGCAACTTCATTTCAACGAGATCAAAGAATCAAACAAACTGCTGGTGGTTGATTTCTCGGCCTCATGGTGCGGACCATGTAGGATGATTGAGCCTGCGATTCATGCCATGGCTGATAAGTTCAATGATGTTGATTTCGTCAAATTAGATGTTGATGAACTTCCTGATGTGGCTAAAGAGTTTAATGTGACGGCAATGCCTACCTTTGTGCTGGTGAAAAGGGGTAAAGAAATTGAAAGAATCATTGGTGCCAAAAAGGACGAACTTGAGAAGAAAGTTAGCAAACTCAGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

133

Amino Acids

14.68

Weight (kDa)

5.74

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	40 - 129	8.6e-29	Thioredoxin
Thioredoxin_2	PF13098	44 - 125	3.9e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	101
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	99, 177
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	121, 229, 341
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	3 cut(s)	11, 50, 93
AluI	AGCT	3 cut(s)	11, 50, 93
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	57, 179
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	2 cut(s)	57, 179
BanI	GGYRCC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme18I	GGWCC	2 cut(s)	57, 179
BmgT120I	GGNCC	2 cut(s)	57, 179
BmiI	GGNNCC	2 cut(s)	58, 355
BmsI	GCATC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	2 cut(s)	99, 177
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	58, 355
BspMAI	CTGCAG	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	66, 392
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 209
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	57, 179
CseI	GACGC	1 cut(s)	67
CviAII	CATG	4 cut(s)	171, 183, 209, 214
CviJI	RGCY	8 cut(s)	11, 50, 70, 93, 167, 199, 218, 278
CviKI_1	RGCY	8 cut(s)	11, 50, 70, 93, 167, 199, 218, 278
DdeI	CTNAG	2 cut(s)	66, 392
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	57, 179
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	4 cut(s)	174, 186, 212, 217
FaiI	YATR	5 cut(s)	172, 184, 210, 215, 400
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	4 cut(s)	170, 182, 208, 213
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	167
HgaI	GACGC	1 cut(s)	67
Hin1II	CATG	4 cut(s)	174, 186, 212, 217
HinfI	GANTC	4 cut(s)	62, 134, 205, 345
HphI	GGTGA	1 cut(s)	331
Hpy188I	TCNGA	2 cut(s)	67, 395
Hpy188III	TCNNGA	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	44, 53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 209
HpyF3I	CTNAG	2 cut(s)	66, 392
Hsp92II	CATG	4 cut(s)	174, 186, 212, 217
Kzo9I	GATC	1 cut(s)	126
LguI	GCTCTTC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	5 cut(s)	39, 134, 213, 282, 302
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	128
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	1 cut(s)	126
MboII	GAAGA	3 cut(s)	50, 87, 388
MluCI	AATT	2 cut(s)	248, 336
MnlI	CCTC	1 cut(s)	178
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	50, 209
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	4 cut(s)	174, 186, 212, 217
NlaIV	GGNNCC	2 cut(s)	58, 355
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	100
PfeI	GAWTC	4 cut(s)	62, 134, 205, 345
PkrI	GCNGC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	58, 355
PspPI	GGNCC	2 cut(s)	57, 179
PstI	CTGCAG	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	57, 179
SetI	ASST	4 cut(s)	13, 52, 95, 311
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	2 cut(s)	57, 179
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	248, 336
SsiI	CCGC	2 cut(s)	99, 177
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	22
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	248, 336
TfiI	GAWTC	4 cut(s)	62, 134, 205, 345
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	104, 197, 276
VpaK11BI	GGWCC	2 cut(s)	57, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.