Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

4651830 .. 4652943

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGAGGTAGCACGTCACACTTTGAAGACTCGGATGAATCGGATGAATTTCCACGTGAACACAAGTCTCGCATCGTGGCCTTCCATTCCGAGGACCAATGGAACACCCACTTTGCTGCCGTCAAAGACAGCAATAAACTGATGGTGATTGATTTCACGGCTAAATGGTGTGGACCTTGTAGAGCCATGGTGCCAATCTTCAGAGAGTATGCTGATAAATTCACCGATGTTGAGTTCGTCAAGATTGATGTCGACGAGCTATCGGATGTGGCAATGGAGTTTAGTGTGCAGGCAATGCCTTCATTTGTATTCGTGAAGAAAGGGGAGGTGGTTGATAAGGTCGTGGGGGCCATGAAAGATGAACTGCAGAAGAAGATTGAGAAACACAGGAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

133

Amino Acids

15.18

Weight (kDa)

5.35

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	47, 218
AcuI	CTGAAG	1 cut(s)	184
AcvI	CACGTG	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	26
AjiI	CACGTC	1 cut(s)	15
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	2 cut(s)	78, 348
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	47, 218
AspS9I	GGNCC	3 cut(s)	94, 173, 348
AsuHPI	GGTGA	2 cut(s)	157, 214
AvaII	GGWCC	2 cut(s)	94, 173
BanI	GGYRCC	1 cut(s)	190
BbrPI	CACGTG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	2 cut(s)	104, 174
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	365
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	94, 173
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	3 cut(s)	94, 173, 348
BmiI	GGNNCC	2 cut(s)	192, 349
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	90, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse3DI	GCAATG	2 cut(s)	279, 300
BseDI	CCNNGG	2 cut(s)	90, 186
BseGI	GGATG	3 cut(s)	40, 49, 271
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	2 cut(s)	279, 300
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	2 cut(s)	80, 350
BshNI	GGYRCC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	80, 350
Bsp143I	GATC	1 cut(s)	392
Bsp19I	CCATGG	1 cut(s)	186
BspANI	GGCC	2 cut(s)	80, 350
BspLI	GGNNCC	2 cut(s)	192, 349
BspMAI	CTGCAG	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	2 cut(s)	279, 300
BssECI	CCNNGG	2 cut(s)	90, 186
BssMI	GATC	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	40, 49, 271
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	80, 350
BtgI	CCRYGG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	40, 49, 271
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	3 cut(s)	94, 173, 348
CviAII	CATG	2 cut(s)	187, 352
CviJI	RGCY	5 cut(s)	80, 161, 185, 259, 350
CviKI_1	RGCY	5 cut(s)	80, 161, 185, 259, 350
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	94, 173
Eco57I	CTGAAG	1 cut(s)	184
Eco72I	CACGTG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	190, 355
FaiI	YATR	4 cut(s)	188, 210, 353, 397
FatI	CATG	2 cut(s)	186, 351
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	3 cut(s)	47, 56, 278
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	80, 350
Hin1II	CATG	2 cut(s)	190, 355
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	29, 38
HphI	GGTGA	2 cut(s)	157, 214
Hpy166II	GTNNAC	3 cut(s)	59, 173, 253
Hpy188I	TCNGA	5 cut(s)	34, 43, 91, 203, 265
Hpy188III	TCNNGA	2 cut(s)	241, 313
Hpy8I	GTNNAC	3 cut(s)	59, 173, 253
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	91, 309
HpyCH4IV	ACGT	2 cut(s)	14, 55
HpyCH4V	TGCA	2 cut(s)	289, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpySE526I	ACGT	2 cut(s)	14, 55
Hsp92II	CATG	2 cut(s)	190, 355
Kzo9I	GATC	1 cut(s)	392
LpnPI	CCDG	2 cut(s)	275, 373
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	81
MaeII	ACGT	2 cut(s)	14, 55
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	5 cut(s)	38, 190, 328, 382, 385
MluCI	AATT	2 cut(s)	47, 218
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	85, 319
MwoI	GCNNNNNNNGC	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	2 cut(s)	190, 355
NlaIV	GGNNCC	2 cut(s)	192, 349
NmuCI	GTSAC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	23
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	23
Ppu21I	YACGTR	1 cut(s)	56
PspCI	CACGTG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	192, 349
PspPI	GGNCC	3 cut(s)	94, 173, 348
PstI	CTGCAG	1 cut(s)	369
SalI	GTCGAC	1 cut(s)	251
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	3 cut(s)	94, 173, 348
SchI	GAGTC	1 cut(s)	23
SetI	ASST	7 cut(s)	10, 17, 58, 178, 261, 330, 342
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	365
SinI	GGWCC	2 cut(s)	94, 173
Sse9I	AATT	2 cut(s)	47, 218
StyI	CCWWGG	1 cut(s)	186
TaiI	ACGT	2 cut(s)	17, 58
TaqI	TCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	47, 218
TfiI	GAWTC	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	5 cut(s)	51, 60, 291, 368, 375
VpaK11BI	GGWCC	2 cut(s)	94, 173
XapI	RAATTY	2 cut(s)	47, 218
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.