Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Reverse (-)

32905602 .. 32906526

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGAAGCAACCTCTCTAACCACAGCATTGTCGACGACTCGGATGGATCATCACATGGAAAGAAGTCTCGCATCATGTCCTTCCACTCCAAGGACCAATGGAAGACCCATTTCACTGCCTCTAAGCAAACTAACAAGCTGATGGTGATTGATTTCACGGCAACATGGTGCGGACCTTGTCGATCGATGGAGCCAGCCTTGAAAGAGTATGCTGATAAGTACACCGACGTCGAGTTTGTCAAGCTTGATGTCGACGAGTTACCGGATGTGGCGATGGAGTTTGGGGTGCAGGCAATGCCTTCGTTTGTGTTTATTAAGAAAGGAGAAGTGATTGATAGAGTTGTCGGGGCCAGGAAGGAGGAACTCCAGAAGAAGATTGAGAAACACAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

132

Amino Acids

14.88

Weight (kDa)

6.96

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	39 - 128	1.8e-28	Thioredoxin
Thioredoxin_2	PF13098	42 - 124	1.1e-08	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccI	GTMKAC	2 cut(s)	33, 252
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	139, 244
AluI	AGCT	2 cut(s)	139, 244
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	348
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	3 cut(s)	94, 173, 348
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	94, 173
BbsI	GAAGAC	1 cut(s)	110
BccI	CCATC	4 cut(s)	38, 136, 181, 268
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	2 cut(s)	94, 173
BmgT120I	GGNCC	3 cut(s)	94, 173, 348
BmiI	GGNNCC	2 cut(s)	192, 349
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	352
BseCI	ATCGAT	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	49, 271
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	47, 182
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	350
BspDI	ATCGAT	1 cut(s)	185
BspLI	GGNNCC	2 cut(s)	192, 349
BspPI	GGATC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	47, 182
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	195, 291
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	49, 271
BstKTI	GATC	2 cut(s)	50, 185
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	47, 182
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	110
Bsu15I	ATCGAT	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	350
BsuTUI	ATCGAT	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	49, 271
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	195, 291
Cfr13I	GGNCC	3 cut(s)	94, 173, 348
ClaI	ATCGAT	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	3 cut(s)	56, 76, 165
CviJI	RGCY	5 cut(s)	139, 193, 197, 244, 350
CviKI_1	RGCY	5 cut(s)	139, 193, 197, 244, 350
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	49, 184
DpnII	GATC	2 cut(s)	47, 182
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	94, 173
EcoRII	CCWGG	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	3 cut(s)	59, 79, 168
FaiI	YATR	4 cut(s)	57, 77, 166, 210
FatI	CATG	3 cut(s)	55, 75, 164
FblI	GTMKAC	2 cut(s)	33, 252
FokI	GGATG	2 cut(s)	56, 278
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	59, 79, 168
HincII	GTYRAC	2 cut(s)	34, 253
HindII	GTYRAC	2 cut(s)	34, 253
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	34, 222, 253
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	3 cut(s)	34, 222, 253
Hpy99I	CGWCG	4 cut(s)	38, 230, 233, 257
HpyAV	CCTTC	3 cut(s)	91, 309, 349
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	59, 79, 168
Kzo9I	GATC	2 cut(s)	47, 182
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	7 cut(s)	207, 275, 276, 337, 364, 373, 380
LweI	GCATC	1 cut(s)	81
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	2 cut(s)	49, 184
MboI	GATC	2 cut(s)	47, 182
MboII	GAAGA	3 cut(s)	115, 382, 385
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	3 cut(s)	23, 130, 352
MseI	TTAA	2 cut(s)	315, 394
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	2 cut(s)	47, 182
NlaIII	CATG	3 cut(s)	59, 79, 168
NlaIV	GGNNCC	2 cut(s)	192, 349
PflFI	GACNNNGTC	1 cut(s)	177
Ple19I	CGATCG	1 cut(s)	185
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	192, 349
PspPI	GGNCC	3 cut(s)	94, 173, 348
PsyI	GACNNNGTC	1 cut(s)	177
PvuI	CGATCG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SalI	GTCGAC	2 cut(s)	32, 251
SaqAI	TTAA	2 cut(s)	315, 394
Sau3AI	GATC	2 cut(s)	47, 182
Sau96I	GGNCC	3 cut(s)	94, 173, 348
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	352
SetI	ASST	5 cut(s)	15, 141, 178, 231, 246
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	2 cut(s)	94, 173
SsiI	CCGC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	5 cut(s)	33, 181, 185, 231, 252
TatI	WGTACW	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	315, 394
Tru9I	TTAA	2 cut(s)	315, 394
TscAI	CASTG	1 cut(s)	121
TspRI	CASTG	1 cut(s)	121
Tth111I	GACNNNGTC	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	94, 173
XmiI	GTMKAC	2 cut(s)	33, 252
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.