Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

4520845 .. 4522214

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGAGGCAACATGTCACACATTCCAGACTCGGATGAATCTTCACATGGACACGAGTCTCGCATCGTGGCCTTCCATTCCAAGGGTCAATGGAACACCCACTTCGCTGCCTTCAAAGATAGCGATAAACTGATGGTGATTGATTTCACGGCTACATGGTGTGGACCTTGTAGAGCCATGGAGCCAATCTTGAGAGACTACGCTGATAAATTCACCGACGTCGAGTTCGTCAAGCTTGATGTCGACGAGCTACCGGATGTAGCAAGGGAGTTTGGGGTGCAGGCAATGCCATCATTTGTATTCATGAAGAAAGGGGTGGTGGTTGATAAGATCGTGGGGGCTAGGAAAGATGAACTGCAGAAGAAGATTGAGAAACATAGGACGCCGAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

132

Amino Acids

14.87

Weight (kDa)

6.29

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	35 - 125	1.2e-27	Thioredoxin
Thioredoxin_2	PF13098	42 - 120	2.6e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	209
AcyI	GRCGYC	2 cut(s)	219, 383
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	2 cut(s)	235, 250
AluI	AGCT	2 cut(s)	235, 250
Alw26I	GTCTC	2 cut(s)	63, 189
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	148, 205
AvaII	GGWCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	2 cut(s)	127, 298
BceAI	ACGGC	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	63, 189
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	1 cut(s)	72
BoxI	GACNNNNGTC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	211
BsaHI	GRCGYC	2 cut(s)	219, 383
BsaJI	CCNNGG	2 cut(s)	81, 177
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	81, 177
BseGI	GGATG	2 cut(s)	40, 262
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	2 cut(s)	63, 189
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	330, 389
Bsp19I	CCATGG	1 cut(s)	177
BspANI	GGCC	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	81, 177
BssMI	GATC	2 cut(s)	330, 389
BssNI	GRCGYC	2 cut(s)	219, 383
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	2 cut(s)	81, 177
Bst2BI	CACGAG	1 cut(s)	53
BstACI	GRCGYC	2 cut(s)	219, 383
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	40, 262
BstKTI	GATC	2 cut(s)	333, 392
BstMAI	GTCTC	2 cut(s)	63, 189
BstMBI	GATC	2 cut(s)	330, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	16
BstPAI	GACNNNNGTC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	40, 262
Cac8I	GCNNGC	1 cut(s)	282
CciI	TCATGA	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	164
CseI	GACGC	1 cut(s)	391
CviAII	CATG	5 cut(s)	13, 47, 156, 178, 304
CviJI	RGCY	7 cut(s)	71, 152, 176, 184, 235, 250, 341
CviKI_1	RGCY	7 cut(s)	71, 152, 176, 184, 235, 250, 341
DpnI	GATC	2 cut(s)	332, 391
DpnII	GATC	2 cut(s)	330, 389
Eco130I	CCWWGG	2 cut(s)	81, 177
Eco47I	GGWCC	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	81, 177
ErhI	CCWWGG	2 cut(s)	81, 177
FaeI	CATG	5 cut(s)	16, 50, 159, 181, 307
FaiI	YATR	7 cut(s)	14, 48, 157, 179, 305, 378, 394
FatI	CATG	5 cut(s)	12, 46, 155, 177, 303
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	2 cut(s)	47, 269
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	391
Hin1I	GRCGYC	2 cut(s)	219, 383
Hin1II	CATG	5 cut(s)	16, 50, 159, 181, 307
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	3 cut(s)	29, 38, 56
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	148, 205
Hpy166II	GTNNAC	2 cut(s)	164, 244
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	26, 190, 304
Hpy8I	GTNNAC	2 cut(s)	164, 244
Hpy99I	CGWCG	3 cut(s)	221, 224, 248
HpyAV	CCTTC	2 cut(s)	82, 121
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	280, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	2 cut(s)	219, 383
Hsp92II	CATG	5 cut(s)	16, 50, 159, 181, 307
Kzo9I	GATC	2 cut(s)	330, 389
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	3 cut(s)	39, 266, 267
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	2 cut(s)	332, 391
MboI	GATC	2 cut(s)	330, 389
MboII	GAAGA	4 cut(s)	33, 319, 373, 376
MluCI	AATT	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	23, 65
MspI	CCGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	330, 389
NlaIII	CATG	5 cut(s)	16, 50, 159, 181, 307
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	16
PagI	TCATGA	1 cut(s)	303
PciI	ACATGT	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	23, 64
PpsI	GAGTC	2 cut(s)	23, 64
PscI	ACATGT	1 cut(s)	12
PshAI	GACNNNNGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	360
SalI	GTCGAC	1 cut(s)	242
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	330, 389
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	23, 65
SetI	ASST	4 cut(s)	169, 222, 237, 252
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	1 cut(s)	209
SspMI	CTAG	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	81, 177
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	222, 243
TasI	AATT	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	4 cut(s)	51, 292, 320, 366
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.