MD13G1081000.v1.1

Belongs to the thioredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0002536
Physical Location & Seq
Forward (+)
5700974 .. 5702137
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1081000.v1.1.491

Sequence Viewer

Length: 288 bp
ATGGGAGGTAACATGTCACACATTGAAGACTCGGATGAATCTCCACGTGAACACCAGTCTCGCATCGTGGCCTGCCATTCCAAGGAACAATGGAACACCCACTTTGATGCCGTCCAAGACAGCAATAAACTGTACGCTGATAAATTCACCGATGTTGAGTTTGTCAAACTTGATGTCGACGAGTTTCCGGGAGTGGAGGTGGTTGATAAGCTCGTGGGGGCCAGGAAAGATGAACTGCAGAAGAAGATTGAGAATCACAGGAACTGTGATTATAATGTCTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

96

Amino Acids

11.01

Weight (kDa)

4.95

Isoelectric Point (pI)

60.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccI GTMKAC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 143
AcvI CACGTG 1 cut(s) 47
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 264
AoxI GGCC 2 cut(s) 69, 219
ApoI RAATTY 1 cut(s) 143
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 139
BauI CACGAG 1 cut(s) 212
BbrPI CACGTG 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 223
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 236
Bme1390I CCNGG 2 cut(s) 189, 223
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 189, 223
BmsI GCATC 2 cut(s) 72, 97
BpiI GAAGAC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 55
BshFI GGCC 2 cut(s) 71, 221
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 63
BsnI GGCC 2 cut(s) 71, 221
BspANI GGCC 2 cut(s) 71, 221
BspLI GGNNCC 1 cut(s) 220
BspMAI CTGCAG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 81
BssSI CACGAG 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 132, 266
BstBAI YACGTR 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 73
BstF5I GGATG 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 63
BstNI CCWGG 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 2 cut(s) 187, 221
BstSFI CTRYAG 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 71, 221
BtsCI GGATG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 13
CviJI RGCY 3 cut(s) 71, 211, 221
CviKI_1 RGCY 3 cut(s) 71, 211, 221
CviQI GTAC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 81
Eco72I CACGTG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 16
FaiI YATR 2 cut(s) 14, 273
FatI CATG 1 cut(s) 12
FblI GTMKAC 1 cut(s) 177
FokI GGATG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 71, 221
HapII CCGG 1 cut(s) 188
Hin1II CATG 1 cut(s) 16
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 3 cut(s) 29, 38, 253
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 50, 178
Hpy188I TCNGA 1 cut(s) 34
Hpy8I GTNNAC 2 cut(s) 50, 178
Hpy99I CGWCG 1 cut(s) 182
HpyCH4III ACNGT 2 cut(s) 132, 266
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 238
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 1 cut(s) 16
LpnPI CCDG 6 cut(s) 68, 85, 201, 208, 235, 244
LweI GCATC 2 cut(s) 72, 97
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 8, 15
MboII GAAGA 3 cut(s) 38, 253, 256
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 1 cut(s) 190
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 189, 223
MvaI CCWGG 1 cut(s) 223
NciI CCSGG 1 cut(s) 189
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 15
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PfeI GAWTC 2 cut(s) 38, 253
PfoI TCCNGGA 1 cut(s) 187
PleI GAGTC 1 cut(s) 23
PmaCI CACGTG 1 cut(s) 47
PmlI CACGTG 1 cut(s) 47
PpsI GAGTC 1 cut(s) 23
Ppu21I YACGTR 1 cut(s) 47
PscI ACATGT 1 cut(s) 12
PsiI TTATAA 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 221
PspCI CACGTG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 219
PstI CTGCAG 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 264
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 105
SalI GTCGAC 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 189, 223
SetI ASST 4 cut(s) 10, 49, 201, 213
SfaNI GCATC 2 cut(s) 72, 97
SfcI CTRYAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 187, 221
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 132, 266
TaiI ACGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 143
TfiI GAWTC 2 cut(s) 38, 253
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 51, 246
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.