Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Reverse (-)

68245491 .. 68248835

Gene Structure 3345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG448000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGAAGCAACCACAGCATTGTTGACGACTCGGATGGATCATCACATGGAAAGAAGTCTCGCATCATGTCCTTCCATTCCAAGGACCAATGGAAGACCCACTTCACTGCCTCTAAGCAAACTAACAAGCTGATTGTGATTGATTTCACGGCAACATGGTGCGGACCTTGTCGATCAATGGAGCCAGCCTTGAAAGAGTATGCTGATAAGTACACTGACGTCGAGTTTGTGAAGCTTGATGTGGACGAGTTACCGGTAATTATTGATTACATAGTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

93

Amino Acids

10.58

Weight (kDa)

5.7

Isoelectric Point (pI)

21.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	23 - 83	9.6e-06	AhpC/TSA family
Thioredoxin	PF00085	35 - 85	9.2e-16	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgeI	ACCGGT	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	2 cut(s)	130, 235
AluI	AGCT	2 cut(s)	130, 235
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	46
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AsiGI	ACCGGT	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	85, 164
AvaII	GGWCC	2 cut(s)	85, 164
BbsI	GAAGAC	1 cut(s)	101
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	63
Bme18I	GGWCC	2 cut(s)	85, 164
BmgT120I	GGNCC	2 cut(s)	85, 164
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	38, 173
BspACI	CCGC	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	38, 173
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	41, 176
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	38, 173
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 213
Cac8I	GCNNGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	85, 164
Csp6I	GTAC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	253
CviAII	CATG	3 cut(s)	47, 67, 156
CviJI	RGCY	4 cut(s)	130, 184, 188, 235
CviKI_1	RGCY	4 cut(s)	130, 184, 188, 235
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	40, 175
DpnII	GATC	2 cut(s)	38, 173
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	85, 164
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	50, 70, 159
FaiI	YATR	5 cut(s)	48, 68, 157, 201, 272
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	3 cut(s)	46, 66, 155
FokI	GGATG	1 cut(s)	47
HapII	CCGG	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	50, 70, 159
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	25, 213, 244
Hpy188I	TCNGA	1 cut(s)	34
Hpy8I	GTNNAC	3 cut(s)	25, 213, 244
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	50, 70, 159
Kzo9I	GATC	2 cut(s)	38, 173
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	2 cut(s)	198, 267
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	2 cut(s)	40, 175
MboI	GATC	2 cut(s)	38, 173
MboII	GAAGA	1 cut(s)	106
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	1 cut(s)	121
MspI	CCGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	2 cut(s)	38, 173
NlaIII	CATG	3 cut(s)	50, 70, 159
NlaIV	GGNNCC	1 cut(s)	183
PflFI	GACNNNGTC	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	253
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	85, 164
PsyI	GACNNNGTC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
Sau3AI	GATC	2 cut(s)	38, 173
Sau96I	GGNCC	2 cut(s)	85, 164
SchI	GAGTC	1 cut(s)	23
SetI	ASST	4 cut(s)	132, 169, 222, 237
SfaNI	GCATC	1 cut(s)	72
SinI	GGWCC	2 cut(s)	85, 164
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	172, 222
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	210
TscAI	CASTG	2 cut(s)	112, 220
TspRI	CASTG	2 cut(s)	112, 220
Tth111I	GACNNNGTC	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	85, 164
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.