Rmu_sc0000050.1_g000025

Belongs to the thioredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000050.1
OG0002536
Physical Location & Seq
Forward (+)
99892 .. 100257
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000050.1_g000025.1.cds

Sequence Viewer

Length: 282 bp
atggtggtgtttgttttggggatgaagattgtgattgatttcacggcaacatggtgcggaccttgtcgatcgatggagccagccttgaaagagtatgctgataagtacactgacgtcgagtttgtgaagcttgatgtggacgagttaccggatgtggcgatggagtttggggtgcaggcaatgccttcctttctgtttattaagaaaggagaagtgattgatagagttgtcggggccaggaaggaggaactccagaggaagattgagaaacacaggaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

93

Amino Acids

10.7

Weight (kDa)

5.4

Isoelectric Point (pI)

24.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AciI CCGC 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 107
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
AoxI GGCC 1 cut(s) 234
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspS9I GGNCC 2 cut(s) 59, 234
AvaII GGWCC 1 cut(s) 59
BccI CCATC 2 cut(s) 67, 154
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 59, 234
BmiI GGNNCC 2 cut(s) 78, 235
BmrFI CCNGG 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 236
Bsa29I ATCGAT 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 238
BseCI ATCGAT 1 cut(s) 71
BseGI GGATG 2 cut(s) 27, 157
BseMI GCAATG 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 194
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 236
BspDI ATCGAT 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 78, 235
BsrDI GCAATG 1 cut(s) 186
BssMI GATC 1 cut(s) 68
BssNI GRCGYC 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 238
BstACI GRCGYC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 81, 177
BstF5I GGATG 2 cut(s) 27, 157
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
Bsu15I ATCGAT 1 cut(s) 71
BsuRI GGCC 1 cut(s) 236
BsuTUI ATCGAT 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 173
BtsCI GGATG 2 cut(s) 27, 157
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 81, 177
Cfr13I GGNCC 2 cut(s) 59, 234
ClaI ATCGAT 1 cut(s) 71
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 51
CviJI RGCY 4 cut(s) 79, 83, 130, 236
CviKI_1 RGCY 4 cut(s) 79, 83, 130, 236
CviQI GTAC 1 cut(s) 106
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 236
FaeI CATG 1 cut(s) 54
FaiI YATR 2 cut(s) 52, 96
FatI CATG 1 cut(s) 50
FokI GGATG 2 cut(s) 34, 164
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 128
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 108, 139
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 2 cut(s) 108, 139
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 195, 235
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 54
Kzo9I GATC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 7 cut(s) 93, 161, 162, 223, 250, 259, 266
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 144
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 2 cut(s) 37, 271
MluCI AATT 1 cut(s) 277
MnlI CCTC 2 cut(s) 238, 249
MseI TTAA 1 cut(s) 201
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 2 cut(s) 78, 235
PflFI GACNNNGTC 1 cut(s) 63
Ple19I CGATCG 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 78, 235
PspPI GGNCC 2 cut(s) 59, 234
PsyI GACNNNGTC 1 cut(s) 63
PvuI CGATCG 1 cut(s) 71
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 201
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 2 cut(s) 59, 234
ScrFI CCNGG 1 cut(s) 238
SetI ASST 3 cut(s) 64, 117, 132
SinI GGWCC 1 cut(s) 59
Sse9I AATT 1 cut(s) 277
SsiI CCGC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 236
TaiI ACGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 67, 71, 117
TasI AATT 1 cut(s) 277
TatI WGTACW 1 cut(s) 105
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 1 cut(s) 115
Tth111I GACNNNGTC 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 59
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.