Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

5718102 .. 5719441

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1081200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGAGGCAACGTGTCACACATTCAAGACTCGGATGAATCTTCACATGGACACAAGTCTCGCATCGTGGCCTTCCATTCCAAGCATCAATGGAACACCCACTTCGCTGCCTCCATAAACAGCGATAAACTGTTGGTGATTGATTTCACGGCTACATGGTGTGGACCTTGTAGAGCCATGGAACCAATTTTCAGAGAGTACGCTGATAAATTCACAGACGTTGAGTTCATCAAGCTTGATGTCGACGAGCTACCGGATGTGGCAATGGAGTTTGGTGTGCAGGCAATGCCTTCATTTGTATATATGAAGAAAGGGGAGGTGGTTGATAGGATCGTAGGGGCCAGGAAAGATGAACTGCAAAAGAAGATTGAGAAACACAGGAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

6.37

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	32 - 125	1.4e-27	Thioredoxin
Thioredoxin_2	PF13098	42 - 120	9e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	235, 250
AluI	AGCT	2 cut(s)	235, 250
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	69, 339
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	164, 339
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 339
BmiI	GGNNCC	2 cut(s)	183, 340
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	2 cut(s)	72, 94
BoxI	GACNNNNGTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bse3DI	GCAATG	2 cut(s)	270, 291
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	40, 262
BseMI	GCAATG	2 cut(s)	270, 291
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	71, 341
BsiSI	CCGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	71, 341
Bsp143I	GATC	2 cut(s)	330, 383
Bsp19I	CCATGG	1 cut(s)	177
BspANI	GGCC	2 cut(s)	71, 341
BspLI	GGNNCC	2 cut(s)	183, 340
BspPI	GGATC	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	270, 291
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	330, 383
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	40, 262
BstKTI	GATC	2 cut(s)	333, 386
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	330, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	343
BstPAI	GACNNNNGTC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	71, 341
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	40, 262
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	164, 339
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	3 cut(s)	47, 156, 178
CviJI	RGCY	6 cut(s)	71, 152, 176, 235, 250, 341
CviKI_1	RGCY	6 cut(s)	71, 152, 176, 235, 250, 341
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	2 cut(s)	332, 385
DpnII	GATC	2 cut(s)	330, 383
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	50, 159, 181
FaiI	YATR	8 cut(s)	48, 116, 157, 179, 301, 303, 305, 388
FatI	CATG	3 cut(s)	46, 155, 177
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	2 cut(s)	47, 269
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	71, 341
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	3 cut(s)	50, 159, 181
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	29, 38
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	164, 244
Hpy188I	TCNGA	2 cut(s)	34, 194
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	164, 244
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	82, 300
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	2 cut(s)	12, 219
HpyCH4V	TGCA	2 cut(s)	280, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpySE526I	ACGT	2 cut(s)	12, 219
Hsp92II	CATG	3 cut(s)	50, 159, 181
Kzo9I	GATC	2 cut(s)	330, 383
LpnPI	CCDG	5 cut(s)	266, 267, 328, 355, 364
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	72, 94
MaeII	ACGT	2 cut(s)	12, 219
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	2 cut(s)	332, 385
MboI	GATC	2 cut(s)	330, 383
MboII	GAAGA	3 cut(s)	33, 319, 376
MluCI	AATT	2 cut(s)	186, 209
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	121, 310
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	330, 383
NlaIII	CATG	3 cut(s)	50, 159, 181
NlaIV	GGNNCC	2 cut(s)	183, 340
NmuCI	GTSAC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PshAI	GACNNNNGTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	183, 340
PspPI	GGNCC	2 cut(s)	164, 339
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SalI	GTCGAC	1 cut(s)	242
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	330, 383
Sau96I	GGNCC	2 cut(s)	164, 339
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	343
SetI	ASST	6 cut(s)	15, 169, 222, 237, 252, 321
SfaNI	GCATC	2 cut(s)	72, 94
SinI	GGWCC	1 cut(s)	164
Sse9I	AATT	2 cut(s)	186, 209
StyD4I	CCNGG	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	2 cut(s)	15, 222
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	186, 209
TfiI	GAWTC	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	5 cut(s)	51, 217, 282, 320, 366
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.