Rh4AG421400

Belongs to the thioredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002536
Physical Location & Seq
Reverse (-)
71811017 .. 71814982
3966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG421400.1

Sequence Viewer

Length: 291 bp
ATGGGAAGCAACTTCTCTAACCACAGCATTGTTGACGACTCGGATGGATCATCACATGGAAAGAAGTCTCGCATCATGTCCTTCCATTCCAAGGATCAATGGAAGACCCACTTCACTGCCTCTAAGCAAACTAACAAGCTGATTGTGATTGATTTCACGGCAACATGGTGCGGACCTTGTCGATCGATGGAGCCAGCCTTGAAAGAGTATGCTGATAAGTACACCGACGTCGAGTTTGTGAAGCTTGATGTGGACGAGTTACCGGTAATTATTGATTACATAGTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

96

Amino Acids

10.93

Weight (kDa)

5.7

Isoelectric Point (pI)

19.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 38 - 88 1e-15 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AciI CCGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 55, 102
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 91
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 2 cut(s) 139, 244
AluI AGCT 2 cut(s) 139, 244
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 2 cut(s) 55, 102
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AsiGI ACCGGT 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 173
AvaII GGWCC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 110
BccI CCATC 2 cut(s) 38, 181
BceAI ACGGC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 262
BseCI ATCGAT 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 262
BshVI ATCGAT 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 47, 94, 182
BspACI CCGC 1 cut(s) 171
BspDI ATCGAT 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 2 cut(s) 55, 102
BsrFI RCCGGY 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 47, 94, 182
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 3 cut(s) 50, 97, 185
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 3 cut(s) 47, 94, 182
BstMCI CGRYCG 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 185
BsuTUI ATCGAT 1 cut(s) 185
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 185
Csp6I GTAC 1 cut(s) 220
CspAI ACCGGT 1 cut(s) 262
CviAII CATG 3 cut(s) 56, 76, 165
CviJI RGCY 4 cut(s) 139, 193, 197, 244
CviKI_1 RGCY 4 cut(s) 139, 193, 197, 244
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 1 cut(s) 123
DpnI GATC 3 cut(s) 49, 96, 184
DpnII GATC 3 cut(s) 47, 94, 182
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 59, 79, 168
FaiI YATR 5 cut(s) 57, 77, 166, 210, 281
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 3 cut(s) 55, 75, 164
FokI GGATG 1 cut(s) 56
HapII CCGG 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 3 cut(s) 59, 79, 168
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 263
Hpy166II GTNNAC 3 cut(s) 34, 222, 253
Hpy188I TCNGA 1 cut(s) 43
Hpy8I GTNNAC 3 cut(s) 34, 222, 253
Hpy99I CGWCG 2 cut(s) 230, 233
HpyAV CCTTC 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 3 cut(s) 59, 79, 168
Kzo9I GATC 3 cut(s) 47, 94, 182
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 207, 276
LweI GCATC 1 cut(s) 81
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 258
MalI GATC 3 cut(s) 49, 96, 184
MboI GATC 3 cut(s) 47, 94, 182
MboII GAAGA 1 cut(s) 115
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 1 cut(s) 130
MspI CCGG 1 cut(s) 263
NdeII GATC 3 cut(s) 47, 94, 182
NlaIII CATG 3 cut(s) 59, 79, 168
NlaIV GGNNCC 1 cut(s) 192
PflFI GACNNNGTC 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 262
Ple19I CGATCG 1 cut(s) 185
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 177
PvuI CGATCG 1 cut(s) 185
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
Sau3AI GATC 3 cut(s) 47, 94, 182
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 32
SetI ASST 4 cut(s) 141, 178, 231, 246
SfaNI GCATC 1 cut(s) 81
SinI GGWCC 1 cut(s) 173
Sse9I AATT 1 cut(s) 267
SsiI CCGC 1 cut(s) 171
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 181, 185, 231
TasI AATT 1 cut(s) 267
TatI WGTACW 1 cut(s) 219
TscAI CASTG 1 cut(s) 121
TspRI CASTG 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 173
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.