Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000440.1

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

32848 .. 33248

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000440.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgctcggagcaggaccagccgccgccgaggatgccgcgccggaagactctcgggtgatgtcgtttcactcatccgccaggtggcagctccacttcaattccgtcaaggacacctccaaactgctggtggtcgatttctcggcgtcgtggtgcgggccctgcaggttcatagagccggccatccacgccatggcggctaagttcaccgacgtcgacttcgccaagatccctttcttccttcccaaaatgcttcttccttgtgaaggcagtctgcaaagcacagaattgcaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

98

Amino Acids

10.73

Weight (kDa)

5.44

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	153
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	38
AciI	CCGC	6 cut(s)	21, 24, 36, 75, 153, 194
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	291
AcyI	GRCGYC	2 cut(s)	143, 210
AfiI	CCNNNNNNNGG	3 cut(s)	81, 190, 263
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	77
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AlwI	GGATC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	2 cut(s)	155, 177
ApaI	GGGCCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	291
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	14, 155, 156
AsuHPI	GGTGA	2 cut(s)	67, 196
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	153
BglI	GCCNNNNNGGC	1 cut(s)	194
BisI	GCNGC	5 cut(s)	21, 24, 36, 86, 195
BlsI	GCNGC	5 cut(s)	22, 25, 37, 87, 196
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	14, 155, 156
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	51
BsaHI	GRCGYC	2 cut(s)	143, 210
BsaJI	CCNNGG	2 cut(s)	27, 189
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 190, 263
Bse118I	RCCGGY	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	2 cut(s)	27, 189
BseGI	GGATG	3 cut(s)	37, 71, 180
BseLI	CCNNNNNNNGG	3 cut(s)	81, 190, 263
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	157, 179
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	41, 176
BslI	CCNNNNNNNGG	3 cut(s)	81, 190, 263
BsnI	GGCC	2 cut(s)	157, 179
BsoBI	CYCGRG	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	6 cut(s)	21, 24, 36, 75, 153, 194
BspANI	GGCC	2 cut(s)	157, 179
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	27, 189
BssMI	GATC	1 cut(s)	225
BssNI	GRCGYC	2 cut(s)	143, 210
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	79
BstACI	GRCGYC	2 cut(s)	143, 210
BstC8I	GCNNGC	2 cut(s)	155, 177
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	37, 71, 180
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 32, 159, 185, 194
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	157, 179
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	3 cut(s)	37, 71, 180
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	155, 177
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	14, 155, 156
CseI	GACGC	1 cut(s)	132
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	20, 88, 157, 175, 179, 197
CviKI_1	RGCY	6 cut(s)	20, 88, 157, 175, 179, 197
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	170, 191
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	5 cut(s)	21, 24, 36, 86, 195
FokI	GGATG	3 cut(s)	44, 58, 167
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	5 cut(s)	21, 24, 36, 86, 195
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	5 cut(s)	21, 24, 36, 86, 195
HaeIII	GGCC	2 cut(s)	157, 179
HapII	CCGG	2 cut(s)	41, 176
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	2 cut(s)	143, 210
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	2 cut(s)	41, 176
HphI	GGTGA	2 cut(s)	67, 196
Hpy166II	GTNNAC	2 cut(s)	204, 214
Hpy188I	TCNGA	1 cut(s)	8
Hpy8I	GTNNAC	2 cut(s)	204, 214
Hpy99I	CGWCG	3 cut(s)	148, 212, 215
HpyAV	CCTTC	2 cut(s)	248, 257
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	162, 274, 289
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 32, 159, 185, 194
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	2 cut(s)	143, 210
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	175
KroNI	GCCGGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	8, 93
LpnPI	CCDG	8 cut(s)	30, 54, 64, 91, 110, 148, 172, 189
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	210
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	3 cut(s)	56, 226, 245
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	97, 284, 291
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	2 cut(s)	22, 124
MroNI	GCCGGC	1 cut(s)	175
MspI	CCGG	2 cut(s)	41, 176
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	5 cut(s)	17, 32, 159, 185, 194
NaeI	GCCGGC	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	225
NgoMIV	GCCGGC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	157
NmeAIII	GCCGAG	2 cut(s)	52, 119
PdiI	GCCGGC	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	5 cut(s)	22, 25, 37, 87, 196
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	157
PspOMI	GGGCCC	1 cut(s)	155
PspPI	GGNCC	3 cut(s)	14, 155, 156
PstI	CTGCAG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	212
SatI	GCNGC	5 cut(s)	21, 24, 36, 86, 195
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	3 cut(s)	14, 155, 156
SbfI	CCTGCAGG	1 cut(s)	164
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	79
SdaI	CCTGCAGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	83, 90, 116, 167, 213
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	14
Sse8387I	CCTGCAGG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	97, 284, 291
SsiI	CCGC	6 cut(s)	21, 24, 36, 75, 153, 194
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	132, 213
TasI	AATT	3 cut(s)	97, 284, 291
TauI	GCSGC	4 cut(s)	23, 26, 38, 197
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	2 cut(s)	124, 187
XmiI	GTMKAC	1 cut(s)	213
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.