Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002536

Physical Location & Seq

Genomic Coordinates Forward (+)

83435284 .. 83436056

Gene Structure 773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53683

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGATCGTTTCTCTCAAGCATGCTCGGAGGATCATCGCCGGCGGAGGATTCCGCCGCGTCGTCGGAAGACTCTCGGGTGATGTCGTTTCACTCATCCGCCAGGTGGCAGCTCCACTTCAATTCCGTCAAGGACACCTCCAAACTGCTGGTGATCGATTTCTCGGCGTCGTGGTGCGGGCCCTGCAGGTTCATAGAGCCGGCCATCCACGCCATGGCGGATAAGTTCACCGACGTCGACTTCGCCAAGATCGACGTCGACGAGCTCTCTGATGTGTCTCAGGAATTTGGGGTGCAGGCAATGCCGACCTTTGTGCTTTTGAAGAACGGGAAGGAGGTGGATCGGGTTGTTGGTGCCAAGAAAGATGAGCTCGAGAAGAAGGTTCAGAAGTACCGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

5.32

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	41 - 129	5.1e-28	Thioredoxin
Thioredoxin_2	PF13098	44 - 125	2.2e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39950
fragaria_vesca	FvH4_4g35660 FvH4_6g49350 FvH4_6g49370
malus_domestica	MD09G1045800.v1.1 MD13G1080800.v1.1 MD13G1081000.v1.1 MD13G1081100.v1.1 MD13G1081200.v1.1 MD16G1080300.v1.1 MD16G1080400.v1.1 MD17G1046700.v1.1
prunus_persica	Prupe.1G265600_v2.0.a1 Prupe.3G272400_v2.0.a1 Prupe.3G272400_v2.0.a1
pyrus_communis	pycom111g03550 pycom13g07000 pycom16g06950 pycom16g06960 pycom17g04160
rosa_chinensis	RchiOBHm_Chr2g0169221 RchiOBHm_Chr4g0445271
rosa_laevigata	RLG00000005753 RLG00000021843
rosa_multiflora	Rmu_sc0000050.1_g000025 Rmu_sc0036229.1_g000001 Rmu_ssc0000440.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082340 Rroxscaffold_5G00385780
rosa_rugosa	Rorug02G0538200 Rorug02G0538300 Rorug04G0360000
rosa_samantha	Rh2AG609800 Rh2BG622700 Rh2CG591200 Rh2DG633500 Rh4AG421400 Rh4BG433300 Rh4CG448000 Rh4DG429200
rosa_wichuraiana	Rw4G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	237, 258
Acc36I	ACCTGC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccI	GTMKAC	2 cut(s)	237, 258
AccII	CGCG	1 cut(s)	59
AciI	CCGC	6 cut(s)	44, 54, 57, 99, 177, 218
AclWI	GGATC	3 cut(s)	13, 40, 348
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	284
AcyI	GRCGYC	3 cut(s)	167, 234, 255
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	105, 214
AgsI	TTSAA	2 cut(s)	121, 322
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	112, 265, 370
AluI	AGCT	3 cut(s)	112, 265, 370
Alw21I	GWGCWC	2 cut(s)	267, 372
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	3 cut(s)	13, 40, 348
Ama87I	CYCGRG	2 cut(s)	75, 371
AoxI	GGCC	2 cut(s)	179, 201
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AspS9I	GGNCC	2 cut(s)	179, 180
AsuHPI	GGTGA	3 cut(s)	91, 163, 220
AvaI	CYCGRG	2 cut(s)	75, 371
BaeGI	GKGCMC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	3 cut(s)	183, 267, 372
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	267, 372
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	212
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	2 cut(s)	57, 110
BlsI	GCNGC	2 cut(s)	58, 111
Bme1390I	CCNGG	1 cut(s)	103
BmeT110I	CYCGRG	2 cut(s)	75, 371
BmgT120I	GGNCC	2 cut(s)	179, 180
BmiI	GGNNCC	2 cut(s)	181, 355
BmrFI	CCNGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	156
BsaHI	GRCGYC	3 cut(s)	167, 234, 255
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 214
Bse118I	RCCGGY	2 cut(s)	40, 199
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	103
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	95, 204
BseLI	CCNNNNNNNGG	2 cut(s)	105, 214
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	181, 203
BshNI	GGYRCC	1 cut(s)	353
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	267, 372
BsiHKCI	CYCGRG	2 cut(s)	75, 371
BsiSI	CCGG	2 cut(s)	41, 200
BslI	CCNNNNNNNGG	2 cut(s)	105, 214
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	181, 203
BsoBI	CYCGRG	2 cut(s)	75, 371
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	183, 267, 372
Bsp143I	GATC	5 cut(s)	5, 32, 153, 249, 340
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	6 cut(s)	44, 54, 57, 99, 177, 218
BspANI	GGCC	2 cut(s)	181, 203
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	181, 355
BspMAI	CTGCAG	1 cut(s)	188
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	3 cut(s)	13, 40, 348
BspT107I	GGYRCC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	2 cut(s)	40, 199
BssAI	RCCGGY	2 cut(s)	40, 199
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	5 cut(s)	5, 32, 153, 249, 340
BssNI	GRCGYC	3 cut(s)	167, 234, 255
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	395
BstACI	GRCGYC	3 cut(s)	167, 234, 255
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstC8I	GCNNGC	5 cut(s)	23, 42, 179, 201, 297
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	95, 204
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	5 cut(s)	8, 35, 156, 252, 343
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	5 cut(s)	5, 32, 153, 249, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 209, 301
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	181, 203
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	95, 204
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	5 cut(s)	23, 42, 179, 201, 297
Cfr10I	RCCGGY	2 cut(s)	40, 199
Cfr13I	GGNCC	2 cut(s)	179, 180
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	2 cut(s)	48, 156
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	2 cut(s)	22, 214
CviJI	RGCY	6 cut(s)	112, 181, 199, 203, 265, 370
CviKI_1	RGCY	6 cut(s)	112, 181, 199, 203, 265, 370
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	5 cut(s)	7, 34, 155, 251, 342
DpnII	GATC	5 cut(s)	5, 32, 153, 249, 340
EaeI	YGGCCR	1 cut(s)	201
EciI	GGCGGA	4 cut(s)	43, 59, 88, 233
Ecl136II	GAGCTC	2 cut(s)	265, 370
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	3 cut(s)	183, 267, 372
Eco53kI	GAGCTC	2 cut(s)	265, 370
Eco88I	CYCGRG	2 cut(s)	75, 371
EcoICRI	GAGCTC	2 cut(s)	265, 370
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	3 cut(s)	183, 267, 372
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	25, 217
FaiI	YATR	3 cut(s)	23, 194, 215
FatI	CATG	2 cut(s)	21, 213
FauI	CCCGC	1 cut(s)	170
FblI	GTMKAC	2 cut(s)	237, 258
Fnu4HI	GCNGC	2 cut(s)	57, 110
FokI	GGATG	2 cut(s)	82, 191
FriOI	GRGCYC	3 cut(s)	183, 267, 372
Fsp4HI	GCNGC	2 cut(s)	57, 110
GluI	GCNGC	2 cut(s)	57, 110
HaeIII	GGCC	2 cut(s)	181, 203
HapII	CCGG	2 cut(s)	41, 200
HgaI	GACGC	2 cut(s)	48, 156
Hin1I	GRCGYC	3 cut(s)	167, 234, 255
Hin1II	CATG	2 cut(s)	25, 217
HincII	GTYRAC	2 cut(s)	238, 259
HindII	GTYRAC	2 cut(s)	238, 259
HinfI	GANTC	2 cut(s)	50, 71
HpaII	CCGG	2 cut(s)	41, 200
HphI	GGTGA	3 cut(s)	91, 163, 220
Hpy166II	GTNNAC	4 cut(s)	228, 238, 259, 398
Hpy188I	TCNGA	4 cut(s)	29, 67, 271, 387
Hpy188III	TCNNGA	2 cut(s)	281, 373
Hpy8I	GTNNAC	4 cut(s)	228, 238, 259, 398
Hpy99I	CGWCG	8 cut(s)	64, 67, 172, 236, 239, 257, 260, 263
HpyAV	CCTTC	2 cut(s)	325, 373
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	2 cut(s)	234, 255
HpyCH4V	TGCA	2 cut(s)	186, 295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 209, 301
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	2 cut(s)	234, 255
Hsp92I	GRCGYC	3 cut(s)	167, 234, 255
Hsp92II	CATG	2 cut(s)	25, 217
KroI	GCCGGC	2 cut(s)	40, 199
KroNI	GCCGGC	2 cut(s)	42, 201
Kzo9I	GATC	5 cut(s)	5, 32, 153, 249, 340
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	9 cut(s)	54, 88, 115, 134, 172, 196, 213, 266, 281
Lsp1109I	GCAGC	1 cut(s)	121
MaeII	ACGT	2 cut(s)	234, 255
MalI	GATC	5 cut(s)	7, 34, 155, 251, 342
MboI	GATC	5 cut(s)	5, 32, 153, 249, 340
MboII	GAAGA	3 cut(s)	80, 334, 388
MhlI	GDGCHC	3 cut(s)	183, 267, 372
MluCI	AATT	2 cut(s)	121, 284
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	23, 40, 148, 328
MreI	CGCCGGCG	1 cut(s)	40
MroNI	GCCGGC	2 cut(s)	40, 199
MspI	CCGG	2 cut(s)	41, 200
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	183, 209, 301
NaeI	GCCGGC	2 cut(s)	42, 201
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	5 cut(s)	5, 32, 153, 249, 340
NgoMIV	GCCGGC	2 cut(s)	40, 199
NlaIII	CATG	2 cut(s)	25, 217
NlaIV	GGNNCC	2 cut(s)	181, 355
NmeAIII	GCCGAG	1 cut(s)	143
NspI	RCATGY	1 cut(s)	25
PaeI	GCATGC	1 cut(s)	25
PaeR7I	CTCGAG	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 258
PdiI	GCCGGC	2 cut(s)	42, 201
PfeI	GAWTC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	58, 111
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp124BI	GAGCTC	2 cut(s)	267, 372
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	181, 355
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	179, 180
PstI	CTGCAG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SacI	GAGCTC	2 cut(s)	267, 372
SalI	GTCGAC	2 cut(s)	236, 257
SatI	GCNGC	2 cut(s)	57, 110
Sau3AI	GATC	5 cut(s)	5, 32, 153, 249, 340
Sau96I	GGNCC	2 cut(s)	179, 180
SbfI	CCTGCAGG	1 cut(s)	188
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	103
SdaI	CCTGCAGG	1 cut(s)	188
SduI	GDGCHC	3 cut(s)	183, 267, 372
SfcI	CTRYAG	1 cut(s)	184
Sfr274I	CTCGAG	1 cut(s)	371
SgrAI	CRCCGGYG	1 cut(s)	40
SgrDI	CGTCGACG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	16, 371
SmoI	CTYRAG	2 cut(s)	16, 371
SphI	GCATGC	1 cut(s)	25
Sse8387I	CCTGCAGG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	121, 284
SsiI	CCGC	6 cut(s)	44, 54, 57, 99, 177, 218
SstI	GAGCTC	2 cut(s)	267, 372
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	2 cut(s)	237, 258
TaqI	TCGA	5 cut(s)	156, 237, 252, 258, 372
TasI	AATT	2 cut(s)	121, 284
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	237, 258
ZraI	GACGTC	2 cut(s)	235, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.