Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7978180.1

Orthogroup ID

OG0005974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 512

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7978180.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 511 bp

tagccgaagaagacgaagagtccgtcacccaagaccgcaacggctcctccaaaaccgccaagtggaccgtcgagctcgtgcccggatccgactccgtgatccgactcaagagctgcttcggcaagtacctcaccgcctccaaccagcccttccttctcggcatgaccggccgcaaagtcctgcagacgcttcccgggcggctcgattcttctgtcgagtgggagccggtcagggacaggaatcaggtgcggctcaagacccgctacgggaacttcctgcgggccaatgggggcttgccaccgtggcggaactcggtgactcatgatattcctcatagaacggccacccaggattgggttctgtgggaagttgatatagttgagatacaggtgcactctccggcgggtagacccgcggggcctccgccgcttccgcattcggactctttggatttcgagtccagctctccgtcggctgcttcggtcaagtcatcggccagtttcacaagaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

169

Amino Acids

18.68

Weight (kDa)

7.14

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27100 AT1G59710 AT1G59710 AT1G59710 AT1G69890
fragaria_vesca	FvH4_4g35630 FvH4_4g35630
malus_domestica	MD02G1256000.v1.1 MD13G1081700.v1.1 MD16G1080800.v1.1
prunus_persica	Prupe.1G265200_v2.0.a1
pyrus_communis	pycom13g07050 pycom16g06980
rosa_chinensis	RchiOBHm_Chr4g0445251
rosa_laevigata	RLG00000005755
rosa_multiflora	Rmu_co7978180.1_g000001 Rmu_co8393889.1_g000001 Rmu_sc0000050.1_g000027 Rmu_sc0011767.1_g000001 Rmu_sc0023028.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385750
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421200 Rh4BG433100 Rh4CG447700 Rh4DG429100
rosa_wichuraiana	Rw4G036120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	1 cut(s)	415
AclWI	GGATC	3 cut(s)	80, 93, 93
AcoI	YGGCCR	3 cut(s)	168, 341, 494
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	4 cut(s)	62, 266, 353, 354
AhdI	GACNNNNNGTC	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	3 cut(s)	75, 113, 464
AluI	AGCT	3 cut(s)	75, 113, 464
Alw21I	GWGCWC	2 cut(s)	77, 395
Alw44I	GTGCAC	1 cut(s)	391
AlwI	GGATC	3 cut(s)	80, 93, 93
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	5 cut(s)	168, 281, 341, 418, 494
ApaLI	GTGCAC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	113, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	3 cut(s)	65, 281, 418
AsuC2I	CCSGG	3 cut(s)	83, 194, 195
AsuHPI	GGTGA	3 cut(s)	18, 123, 327
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	2 cut(s)	83, 395
BamHI	GGATCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	77, 395
BbvI	GCAGC	2 cut(s)	100, 462
BceAI	ACGGC	2 cut(s)	57, 356
BciT130I	CCWGG	1 cut(s)	349
BcnI	CCSGG	3 cut(s)	83, 194, 195
BfmI	CTRYAG	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	6 cut(s)	114, 171, 199, 250, 427, 476
BlsI	GCNGC	6 cut(s)	115, 172, 200, 251, 428, 477
Bme1390I	CCNGG	4 cut(s)	83, 194, 195, 349
Bme18I	GGWCC	1 cut(s)	65
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	65, 281, 418
BmiI	GGNNCC	4 cut(s)	45, 87, 224, 419
BmrFI	CCNGG	4 cut(s)	83, 194, 195, 349
BpiI	GAAGAC	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpuEI	CTTGAG	2 cut(s)	91, 238
BpuMI	CCSGG	3 cut(s)	83, 194, 195
BsaJI	CCNNGG	4 cut(s)	193, 301, 347, 413
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 266, 353, 354
Bse118I	RCCGGY	2 cut(s)	166, 225
Bse1I	ACTGG	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	4 cut(s)	193, 301, 347, 413
BseLI	CCNNNNNNNGG	4 cut(s)	62, 266, 353, 354
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	2 cut(s)	83, 395
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	100, 462
Bsh1236I	CGCG	1 cut(s)	415
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	5 cut(s)	170, 283, 343, 420, 496
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	2 cut(s)	77, 395
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	5 cut(s)	83, 167, 194, 226, 400
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	4 cut(s)	62, 266, 353, 354
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	5 cut(s)	170, 283, 343, 420, 496
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	3 cut(s)	77, 83, 395
Bsp143I	GATC	2 cut(s)	85, 98
BspANI	GGCC	5 cut(s)	170, 283, 343, 420, 496
BspFNI	CGCG	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	4 cut(s)	45, 87, 224, 419
BspMAI	CTGCAG	1 cut(s)	185
BspPI	GGATC	3 cut(s)	80, 93, 93
BsrFI	RCCGGY	2 cut(s)	166, 225
BsrI	ACTGG	1 cut(s)	497
BssAI	RCCGGY	2 cut(s)	166, 225
BssECI	CCNNGG	4 cut(s)	193, 301, 347, 413
BssMI	GATC	2 cut(s)	85, 98
BssSI	CACGAG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	2 cut(s)	69, 302
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	281, 295
BstDSI	CCRYGG	2 cut(s)	301, 413
BstFNI	CGCG	1 cut(s)	415
BstKTI	GATC	2 cut(s)	88, 101
BstMBI	GATC	2 cut(s)	85, 98
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 167, 195, 303, 426, 432
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	4 cut(s)	81, 192, 193, 347
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	2 cut(s)	83, 395
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	2 cut(s)	100, 462
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	5 cut(s)	170, 283, 343, 420, 496
BtgI	CCRYGG	2 cut(s)	301, 413
Cac8I	GCNNGC	2 cut(s)	281, 295
CciI	TCATGA	1 cut(s)	321
Cfr10I	RCCGGY	2 cut(s)	166, 225
Cfr13I	GGNCC	3 cut(s)	65, 281, 418
Cfr42I	CCGCGG	1 cut(s)	416
Cfr9I	CCCGGG	1 cut(s)	193
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	2 cut(s)	162, 322
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	2 cut(s)	87, 100
DpnII	GATC	2 cut(s)	85, 98
DriI	GACNNNNNGTC	1 cut(s)	18
EaeI	YGGCCR	3 cut(s)	168, 341, 494
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	11
Eam1105I	GACNNNNNGTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	11
EciI	GGCGGA	2 cut(s)	321, 413
Ecl136II	GAGCTC	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	65
Eco52I	CGGCCG	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	77
FaeI	CATG	2 cut(s)	165, 325
FaiI	YATR	4 cut(s)	163, 323, 335, 376
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	161, 321
FauI	CCCGC	5 cut(s)	268, 272, 396, 408, 420
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	114, 171, 199, 250, 427, 476
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	6 cut(s)	114, 171, 199, 250, 427, 476
GluI	GCNGC	6 cut(s)	114, 171, 199, 250, 427, 476
HaeIII	GGCC	5 cut(s)	170, 283, 343, 420, 496
HapII	CCGG	5 cut(s)	83, 167, 194, 226, 400
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	165, 325
HinfI	GANTC	8 cut(s)	19, 91, 104, 205, 240, 318, 442, 457
HpaII	CCGG	5 cut(s)	83, 167, 194, 226, 400
HphI	GGTGA	3 cut(s)	18, 123, 327
Hpy166II	GTNNAC	3 cut(s)	65, 393, 409
Hpy188I	TCNGA	3 cut(s)	90, 103, 441
Hpy188III	TCNNGA	3 cut(s)	108, 255, 322
Hpy8I	GTNNAC	3 cut(s)	65, 393, 409
Hpy99I	CGWCG	2 cut(s)	73, 474
HpyAV	CCTTC	2 cut(s)	159, 163
HpyCH4III	ACNGT	2 cut(s)	69, 302
HpyCH4V	TGCA	2 cut(s)	183, 393
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 167, 195, 303, 426, 432
Hsp92II	CATG	2 cut(s)	165, 325
KspI	CCGCGG	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	85, 98
LmnI	GCTCC	2 cut(s)	49, 222
Lsp1109I	GCAGC	2 cut(s)	100, 462
MaeIII	GTNAC	2 cut(s)	24, 315
MalI	GATC	2 cut(s)	87, 100
MboI	GATC	2 cut(s)	85, 98
MboII	GAAGA	4 cut(s)	19, 22, 28, 200
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	3 cut(s)	77, 83, 395
MlyI	GAGTC	6 cut(s)	28, 85, 98, 312, 436, 466
MmeI	TCCRAC	3 cut(s)	113, 126, 164
MnlI	CCTC	5 cut(s)	57, 139, 147, 341, 431
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	5 cut(s)	83, 167, 194, 226, 400
MspR9I	CCNGG	4 cut(s)	83, 194, 195, 349
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	6 cut(s)	119, 167, 195, 303, 426, 432
NciI	CCSGG	3 cut(s)	83, 194, 195
NdeII	GATC	2 cut(s)	85, 98
NlaIII	CATG	2 cut(s)	165, 325
NlaIV	GGNNCC	4 cut(s)	45, 87, 224, 419
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	24, 315
PagI	TCATGA	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	205, 240
PkrI	GCNGC	6 cut(s)	115, 172, 200, 251, 428, 477
PleI	GAGTC	6 cut(s)	27, 85, 98, 312, 436, 465
PpsI	GAGTC	6 cut(s)	27, 85, 98, 312, 436, 465
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	4 cut(s)	45, 87, 224, 419
PspPI	GGNCC	3 cut(s)	65, 281, 418
PstI	CTGCAG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	77
SacII	CCGCGG	1 cut(s)	416
SatI	GCNGC	6 cut(s)	114, 171, 199, 250, 427, 476
Sau3AI	GATC	2 cut(s)	85, 98
Sau96I	GGNCC	3 cut(s)	65, 281, 418
SchI	GAGTC	6 cut(s)	28, 85, 98, 312, 436, 466
ScrFI	CCNGG	4 cut(s)	83, 194, 195, 349
SduI	GDGCHC	3 cut(s)	77, 83, 395
SetI	ASST	6 cut(s)	77, 115, 131, 248, 392, 466
SfcI	CTRYAG	1 cut(s)	181
Sfr303I	CCGCGG	1 cut(s)	416
SgrBI	CCGCGG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	65
SmaI	CCCGGG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	106, 253
SmoI	CTYRAG	2 cut(s)	106, 253
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	4 cut(s)	81, 192, 193, 347
TaaI	ACNGT	2 cut(s)	69, 302
TaqI	TCGA	4 cut(s)	71, 203, 215, 455
TaqII	GACCGA	1 cut(s)	471
TauI	GCSGC	4 cut(s)	173, 201, 252, 429
TfiI	GAWTC	2 cut(s)	205, 240
TseFI	GTSAC	2 cut(s)	24, 315
TseI	GCWGC	2 cut(s)	113, 475
Tsp45I	GTSAC	2 cut(s)	24, 315
TspGWI	ACGGA	3 cut(s)	12, 84, 458
TspMI	CCCGGG	1 cut(s)	193
VneI	GTGCAC	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	65
XmaI	CCCGGG	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.