Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000050.1

Orthogroup ID

OG0005974

Physical Location & Seq

Genomic Coordinates Reverse (-)

110532 .. 111266

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000050.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggagatctttaacaagtacaaagcggtgaagctccggagccacctggagaagtatctggtcgccgacgaagataaaaagaccgtacgacagagccggaggggaagtaactccagaaacgcgagatggacggtggagctggtcgagaacaaaccccacgtcatacgactcaagagctgctacggcctctacctcaccgcaaccgacatggcgtttctgttaggcgccaccggagaaaaagtgcttcagacggaagccgataggctctgcgactggaagttcgagttcgagcctataaaagacgggtttcagattaagttcagaacatggtgcgggaagtacttacgagctaacggtggaccgccgccgtggagaaacactgttacacatgatgatccaaccacgtcgtcaacgaggaattggattttgtttgatgtagaaggggcggaggttccggtgtcggagcccgttacggactttttgctgtcgcagcagtcgagtttttcatcgtttaattccgatgagattgataatggtacggagtatggatcgccgatggcggttttttctacaaggtcgccgaagacgtcgtcggttttttctaagaggtcgtttttctcagccaggtcgccgtggaattctccgaaagtttcttcaaaacagctattacttcagcaggtatgttctcgatcttcaattatcttcttagtcttgattaatttgataattgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

244

Amino Acids

27.83

Weight (kDa)

9.12

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27100 AT1G59710 AT1G59710 AT1G59710 AT1G69890
fragaria_vesca	FvH4_4g35630 FvH4_4g35630
malus_domestica	MD02G1256000.v1.1 MD13G1081700.v1.1 MD16G1080800.v1.1
prunus_persica	Prupe.1G265200_v2.0.a1
pyrus_communis	pycom13g07050 pycom16g06980
rosa_chinensis	RchiOBHm_Chr4g0445251
rosa_laevigata	RLG00000005755
rosa_multiflora	Rmu_co7978180.1_g000001 Rmu_co8393889.1_g000001 Rmu_sc0000050.1_g000027 Rmu_sc0011767.1_g000001 Rmu_sc0023028.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385750
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421200 Rh4BG433100 Rh4CG447700 Rh4DG429100
rosa_wichuraiana	Rw4G036120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	590
Acc36I	ACCTGC	1 cut(s)	667
AccB1I	GGYRCC	1 cut(s)	224
AccII	CGCG	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	7 cut(s)	26, 198, 333, 362, 365, 446, 560
AclWI	GGATC	2 cut(s)	389, 556
AcsI	RAATTY	1 cut(s)	637
AcuI	CTGAAG	2 cut(s)	230, 656
AcyI	GRCGYC	2 cut(s)	225, 587
AfaI	GTAC	4 cut(s)	20, 87, 341, 538
AgsI	TTSAA	2 cut(s)	657, 696
AjiI	CACGTC	2 cut(s)	160, 405
AjnI	CCWGG	2 cut(s)	45, 623
AluBI	AGCT	5 cut(s)	34, 139, 177, 350, 664
AluI	AGCT	5 cut(s)	34, 139, 177, 350, 664
AlwI	GGATC	2 cut(s)	389, 556
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	177, 490
ApoI	RAATTY	1 cut(s)	637
ArsI	GACNNNNNNTTYG	6 cut(s)	144, 176, 263, 295, 575, 607
AseI	ATTAAT	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	40, 187
AvaII	GGWCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	590
BbvI	GCAGC	2 cut(s)	164, 502
BccI	CCATC	2 cut(s)	120, 550
BceAI	ACGGC	3 cut(s)	199, 352, 616
BciT130I	CCWGG	2 cut(s)	47, 625
BfoI	RGCGCY	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	667
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	178, 365, 491
BlsI	GCNGC	3 cut(s)	179, 366, 492
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	47, 625
Bme18I	GGWCC	1 cut(s)	359
BmgBI	CACGTC	2 cut(s)	160, 405
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	4 cut(s)	41, 226, 453, 465
BmrFI	CCNGG	2 cut(s)	47, 625
BpiI	GAAGAC	1 cut(s)	590
BpmI	CTGGAG	2 cut(s)	68, 97
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	2 cut(s)	225, 587
BsaJI	CCNNGG	2 cut(s)	368, 632
BsaWI	WCCGGW	3 cut(s)	36, 230, 454
BsaXI	ACNNNNNCTCC	4 cut(s)	91, 121, 225, 255
Bse1I	ACTGG	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	47, 625
BseDI	CCNNGG	2 cut(s)	368, 632
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	164, 502
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	4 cut(s)	37, 97, 231, 455
BsiWI	CGTACG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	6, 394, 548, 689
BspACI	CCGC	7 cut(s)	26, 198, 333, 362, 365, 446, 560
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	632
BspEI	TCCGGA	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	4 cut(s)	41, 226, 453, 465
BspMI	ACCTGC	1 cut(s)	667
BspPI	GGATC	2 cut(s)	389, 556
BspT107I	GGYRCC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	368, 632
BssMI	GATC	4 cut(s)	6, 394, 548, 689
BssNI	GRCGYC	2 cut(s)	225, 587
Bst2UI	CCWGG	2 cut(s)	47, 625
Bst4CI	ACNGT	4 cut(s)	85, 133, 356, 382
BstACI	GRCGYC	2 cut(s)	225, 587
BstDEI	CTNAG	3 cut(s)	603, 619, 706
BstDSI	CCRYGG	2 cut(s)	368, 632
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	4 cut(s)	9, 397, 551, 692
BstMBI	GATC	4 cut(s)	6, 394, 548, 689
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 490
BstNI	CCWGG	2 cut(s)	47, 625
BstSCI	CCNGG	2 cut(s)	45, 623
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	164, 502
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	2 cut(s)	368, 632
BtrI	CACGTC	2 cut(s)	160, 405
BtsIMutI	CAGTG	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	667
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	4 cut(s)	19, 86, 340, 537
CviAII	CATG	3 cut(s)	208, 327, 389
CviQI	GTAC	4 cut(s)	19, 86, 340, 537
DdeI	CTNAG	3 cut(s)	603, 619, 706
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	4 cut(s)	8, 396, 550, 691
DpnII	GATC	4 cut(s)	6, 394, 548, 689
EciI	GGCGGA	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	2 cut(s)	230, 656
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	45, 623
EcoT38I	GRGCYC	1 cut(s)	468
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaeI	CATG	3 cut(s)	211, 330, 392
FaiI	YATR	7 cut(s)	164, 209, 296, 328, 390, 546, 682
FatI	CATG	3 cut(s)	207, 326, 388
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	178, 365, 491
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	3 cut(s)	178, 365, 491
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	3 cut(s)	178, 365, 491
GsuI	CTGGAG	2 cut(s)	68, 97
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	4 cut(s)	37, 97, 231, 455
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	2 cut(s)	225, 587
Hin1II	CATG	3 cut(s)	211, 330, 392
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	4 cut(s)	37, 97, 231, 455
HphI	GGTGA	2 cut(s)	40, 187
Hpy166II	GTNNAC	2 cut(s)	359, 411
Hpy188I	TCNGA	6 cut(s)	249, 312, 323, 463, 520, 645
Hpy188III	TCNNGA	6 cut(s)	37, 114, 145, 172, 687, 712
Hpy8I	GTNNAC	2 cut(s)	359, 411
Hpy99I	CGWCG	4 cut(s)	71, 409, 592, 595
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	4 cut(s)	85, 133, 356, 382
HpyCH4IV	ACGT	3 cut(s)	159, 404, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 490
HpyF3I	CTNAG	3 cut(s)	603, 619, 706
HpySE526I	ACGT	3 cut(s)	159, 404, 587
Hsp92I	GRCGYC	2 cut(s)	225, 587
Hsp92II	CATG	3 cut(s)	211, 330, 392
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kpn2I	TCCGGA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	6, 394, 548, 689
LmnI	GCTCC	4 cut(s)	39, 39, 136, 463
Lsp1109I	GCAGC	2 cut(s)	164, 502
MaeII	ACGT	3 cut(s)	159, 404, 587
MaeIII	GTNAC	3 cut(s)	107, 382, 469
MalI	GATC	4 cut(s)	8, 396, 550, 691
MboI	GATC	4 cut(s)	6, 394, 548, 689
MboII	GAAGA	5 cut(s)	83, 595, 645, 684, 694
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	6 cut(s)	418, 514, 637, 696, 718, 726
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	422, 441
MnlI	CCTC	6 cut(s)	93, 197, 203, 408, 442, 600
MroI	TCCGGA	1 cut(s)	36
MseI	TTAA	4 cut(s)	12, 315, 513, 717
MspI	CCGG	4 cut(s)	37, 97, 231, 455
MspR9I	CCNGG	2 cut(s)	47, 625
MvaI	CCWGG	2 cut(s)	47, 625
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	183, 490
NarI	GGCGCC	1 cut(s)	225
NdeII	GATC	4 cut(s)	6, 394, 548, 689
NlaIII	CATG	3 cut(s)	211, 330, 392
NlaIV	GGNNCC	4 cut(s)	41, 226, 453, 465
PcsI	WCGNNNNNNNCGW	3 cut(s)	410, 494, 584
Pfl23II	CGTACG	1 cut(s)	85
PflFI	GACNNNGTC	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	179, 366, 492
PleI	GAGTC	1 cut(s)	162
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	162
PshBI	ATTAAT	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	45, 623
PspGI	CCWGG	2 cut(s)	45, 623
PspLI	CGTACG	1 cut(s)	85
PspN4I	GGNNCC	4 cut(s)	41, 226, 453, 465
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	589
RsaI	GTAC	4 cut(s)	20, 87, 341, 538
RsaNI	GTAC	4 cut(s)	19, 86, 340, 537
SaqAI	TTAA	4 cut(s)	12, 315, 513, 717
SatI	GCNGC	3 cut(s)	178, 365, 491
Sau3AI	GATC	4 cut(s)	6, 394, 548, 689
Sau96I	GGNCC	1 cut(s)	359
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	47, 625
SduI	GDGCHC	1 cut(s)	468
SfoI	GGCGCC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	6 cut(s)	418, 514, 637, 696, 718, 726
SsiI	CCGC	7 cut(s)	26, 198, 333, 362, 365, 446, 560
SspDI	GGCGCC	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	45, 623
TaaI	ACNGT	4 cut(s)	85, 133, 356, 382
TaiI	ACGT	3 cut(s)	162, 407, 590
TaqI	TCGA	5 cut(s)	144, 282, 288, 497, 688
TasI	AATT	6 cut(s)	418, 514, 637, 696, 718, 726
TatI	WGTACW	2 cut(s)	18, 339
TauI	GCSGC	1 cut(s)	367
Tru1I	TTAA	4 cut(s)	12, 315, 513, 717
Tru9I	TTAA	4 cut(s)	12, 315, 513, 717
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	2 cut(s)	177, 490
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	3 cut(s)	266, 488, 554
TspRI	CASTG	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	359
VspI	ATTAAT	1 cut(s)	717
XapI	RAATTY	1 cut(s)	637
ZraI	GACGTC	1 cut(s)	588
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.