AT1G71740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016232
Physical Location & Seq
Forward (+)
26987245 .. 26987637
393 bp
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UTR
Exon/CDS
Intron
AT1G71740.1

Sequence Viewer

Length: 393 bp
ATGGCTCAGACCGTTCCACCATCTCGAACGAAGCCGCTTACAATTTTCAAGATGGGTTTAGCCTCTGCAAGCGTCCGATTGGTTAACCTTGCTTCTCATTCGAAGAGGAAGCTTCGTCGTTGGGCTGCCTGTTATGGCTCTAGAGATTATGAACCTGTTATATATCTCCAAAACGACATGACGATGATGAACAATGGTGGTGTTTATGAATACAACGGAGACCCGAGCATGTTGCTGAGTGGGGATCAGAGACGAGGTCCGTTGTGGCAGAAGAACATTCTCATGGGAGGAAAATGCCAGCTTCCAGATTTCTCAGGTGTTATATTGTATGATGCTGATGGACAAGTTGTTCCTCCGGCCAAGAACTCTCTTCCTTTGCTCACCTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.5

Weight (kDa)

9.65

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71740
fragaria_vesca FvH4_2g12880
prunus_persica Prupe.8G043200_v2.0.a1
pyrus_communis pycom05g02590
rosa_chinensis RchiOBHm_Chr6g0273981
rosa_laevigata RLG00000013587
rosa_multiflora Rmu_sc0000045.1_g000082 Rmu_sc0013374.1_g000008
rosa_roxburghii Rroxscaffold_7G00194830
rosa_rugosa Rorug06G0077900
rosa_samantha Rh6AG193600 Rh6BG197200 Rh6CG197100 Rh6DG189000
rosa_wichuraiana Rw6G016880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 357
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 383
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 2 cut(s) 112, 301
AluI AGCT 2 cut(s) 112, 301
Alw26I GTCTC 2 cut(s) 213, 244
AlwI GGATC 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 223
AvaII GGWCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 112
BccI CCATC 3 cut(s) 28, 46, 332
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 213, 244
BfaI CTAG 1 cut(s) 141
BisI GCNGC 2 cut(s) 35, 126
BlsI GCNGC 2 cut(s) 36, 127
Bme1390I CCNGG 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 322
Bpu14I TTCGAA 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 213
BseBI CCWGG 1 cut(s) 385
BseMII CTCAG 3 cut(s) 20, 227, 327
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 1 cut(s) 356
BsmAI GTCTC 2 cut(s) 213, 244
BsmBI CGTCTC 1 cut(s) 244
BsnI GGCC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 101
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 3 cut(s) 19, 228, 326
BspPI GGATC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 213
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 98, 375
BstBI TTCGAA 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 70, 299
BstDEI CTNAG 3 cut(s) 6, 236, 313
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 2 cut(s) 213, 244
BstMBI GATC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 385
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 383
BstV1I GCAGC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 359
Cac8I GCNNGC 2 cut(s) 70, 299
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 61
CviAII CATG 3 cut(s) 178, 229, 283
CviJI RGCY 8 cut(s) 5, 34, 62, 112, 125, 138, 301, 359
CviKI_1 RGCY 8 cut(s) 5, 34, 62, 112, 125, 138, 301, 359
DdeI CTNAG 3 cut(s) 6, 236, 313
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 98, 375
EarI CTCTTC 2 cut(s) 98, 375
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 383
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 3 cut(s) 181, 232, 286
FatI CATG 3 cut(s) 177, 228, 282
Fnu4HI GCNGC 2 cut(s) 35, 126
Fsp4HI GCNGC 2 cut(s) 35, 126
FspBI CTAG 1 cut(s) 141
GluI GCNGC 2 cut(s) 35, 126
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 356
HgaI GACGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 181, 232, 286
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 110
HpaI GTTAAC 1 cut(s) 85
HpaII CCGG 1 cut(s) 356
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 9, 77, 249
Hpy188III TCNNGA 4 cut(s) 24, 49, 141, 305
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 6, 236, 313
Hsp92II CATG 3 cut(s) 181, 232, 286
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 7 cut(s) 142, 168, 300, 311, 318, 369, 370
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 141
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 3 cut(s) 115, 283, 362
MluCI AATT 1 cut(s) 42
MnlI CCTC 5 cut(s) 73, 99, 248, 281, 363
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 182, 281
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 385
MvaI CCWGG 1 cut(s) 385
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 181, 232, 286
NspI RCATGY 1 cut(s) 232
NspV TTCGAA 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 255
PkrI GCNGC 2 cut(s) 36, 127
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspPI GGNCC 1 cut(s) 257
PsyI GACNNNGTC 1 cut(s) 255
RseI CAYNNNNRTG 2 cut(s) 182, 281
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 35, 126
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 385
SetI ASST 7 cut(s) 90, 114, 157, 259, 303, 319, 386
SfaNI GCATC 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 101
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 182, 281
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 25, 101
TasI AATT 1 cut(s) 42
TauI GCSGC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 165, 203, 222
TspGWI ACGGA 2 cut(s) 231, 249
Tth111I GACNNNGTC 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 257
XbaI TCTAGA 1 cut(s) 140
XceI RCATGY 1 cut(s) 232
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.