FvH4_2g12880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016232
Physical Location & Seq
Reverse (-)
11317350 .. 11317715
366 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12880.t1

Sequence Viewer

Length: 366 bp
ATGGCTCGGCAGCTTCTTCTGTCACACCCCCTACCAAGCATACTTCAAGTCGGCCTGGCTGCTCTGACCCTTCTATGTTGTGCCCTCTCATTGTTCATGTGTGCTTCTCATTCACGCAAATGGCGGCGCCGGTGGAATTCTTGCACTGACTTTTTGGTCGACGACAGTCCAGTAATACAACATATGCAACCAGGTCCGAATGAAGAAAGCATGGATGATAGTGGTGACCAAGAAGACCCGGTCTGGCAGAAAAACATACTCATGGGAGGTAAGTGCCAGCTACCAGATTTTTCAGGAGTCATAATCTATGACGCCGAGGGGAACATCGTCAAGCCAGACAAAACCCCTCGTTTAACCTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.62

Weight (kDa)

5.84

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71740
fragaria_vesca FvH4_2g12880
prunus_persica Prupe.8G043200_v2.0.a1
pyrus_communis pycom05g02590
rosa_chinensis RchiOBHm_Chr6g0273981
rosa_laevigata RLG00000013587
rosa_multiflora Rmu_sc0000045.1_g000082 Rmu_sc0013374.1_g000008
rosa_roxburghii Rroxscaffold_7G00194830
rosa_rugosa Rorug06G0077900
rosa_samantha Rh6AG193600 Rh6BG197200 Rh6CG197100 Rh6DG189000
rosa_wichuraiana Rw6G016880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 159
AciI CCGC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 136
AcyI GRCGYC 2 cut(s) 127, 312
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 3 cut(s) 54, 190, 356
AluBI AGCT 2 cut(s) 13, 280
AluI AGCT 2 cut(s) 13, 280
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 10, 59
ApoI RAATTY 1 cut(s) 136
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 22, 46
BciT130I CCWGG 3 cut(s) 56, 192, 358
BcnI CCSGG 1 cut(s) 239
BfoI RGCGCY 1 cut(s) 130
BisI GCNGC 3 cut(s) 11, 60, 125
BlsI GCNGC 3 cut(s) 12, 61, 126
Bme1390I CCNGG 4 cut(s) 56, 192, 239, 358
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 4 cut(s) 56, 192, 239, 358
BoxI GACNNNNGTC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 239
BsaHI GRCGYC 2 cut(s) 127, 312
BsaJI CCNNGG 1 cut(s) 315
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 3 cut(s) 56, 192, 358
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 2 cut(s) 22, 46
BshFI GGCC 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 126
BsiSI CCGG 2 cut(s) 130, 239
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 85
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 315
BssNI GRCGYC 2 cut(s) 127, 312
Bst2UI CCWGG 3 cut(s) 56, 192, 358
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 2 cut(s) 127, 312
BstC8I GCNNGC 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 224
BstF5I GGATG 1 cut(s) 220
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstNI CCWGG 3 cut(s) 56, 192, 358
BstPAI GACNNNNGTC 1 cut(s) 165
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 4 cut(s) 54, 190, 237, 356
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 2 cut(s) 22, 46
BstV2I GAAGAC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 278
CfoI GCGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 320
CsiI ACCWGGT 1 cut(s) 190
CviAII CATG 3 cut(s) 97, 211, 262
CviJI RGCY 6 cut(s) 5, 13, 54, 59, 280, 334
CviKI_1 RGCY 6 cut(s) 5, 13, 54, 59, 280, 334
DinI GGCGCC 1 cut(s) 128
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 194
Eco91I GGTNACC 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 136
EcoRII CCWGG 3 cut(s) 54, 190, 356
EgeI GGCGCC 1 cut(s) 128
EheI GGCGCC 1 cut(s) 128
FaeI CATG 3 cut(s) 100, 214, 265
FatI CATG 3 cut(s) 96, 210, 261
FauNDI CATATG 1 cut(s) 183
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 11, 60, 125
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 11, 60, 125
GlaI GCGC 1 cut(s) 128
GluI GCNGC 3 cut(s) 11, 60, 125
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 1 cut(s) 54
HapII CCGG 2 cut(s) 130, 239
HgaI GACGC 1 cut(s) 320
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 2 cut(s) 127, 312
Hin1II CATG 3 cut(s) 100, 214, 265
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 297
HpaII CCGG 2 cut(s) 130, 239
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 66, 198
Hpy188III TCNNGA 1 cut(s) 294
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 144, 187
Hsp92I GRCGYC 2 cut(s) 127, 312
Hsp92II CATG 3 cut(s) 100, 214, 265
HspAI GCGC 1 cut(s) 127
KasI GGCGCC 1 cut(s) 126
Lsp1109I GCAGC 2 cut(s) 22, 46
MabI ACCWGGT 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 21, 224
MboII GAAGA 3 cut(s) 8, 215, 245
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 1 cut(s) 136
Mly113I GGCGCC 1 cut(s) 127
MlyI GAGTC 1 cut(s) 306
MnlI CCTC 4 cut(s) 95, 260, 310, 357
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 2 cut(s) 118, 260
MspI CCGG 2 cut(s) 130, 239
MspR9I CCNGG 4 cut(s) 56, 192, 239, 358
MvaI CCWGG 3 cut(s) 56, 192, 358
NarI GGCGCC 1 cut(s) 127
NciI CCSGG 1 cut(s) 239
NdeI CATATG 1 cut(s) 183
NlaIII CATG 3 cut(s) 100, 214, 265
NlaIV GGNNCC 1 cut(s) 128
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 21, 224
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 3 cut(s) 12, 61, 126
PleI GAGTC 1 cut(s) 305
PluTI GGCGCC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 305
PshAI GACNNNNGTC 1 cut(s) 165
Psp6I CCWGG 3 cut(s) 54, 190, 356
PspEI GGTNACC 1 cut(s) 224
PspGI CCWGG 3 cut(s) 54, 190, 356
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 194
PsyI GACNNNGTC 1 cut(s) 239
RseI CAYNNNNRTG 2 cut(s) 118, 260
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 3 cut(s) 11, 60, 125
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 4 cut(s) 56, 192, 239, 358
SduI GDGCHC 1 cut(s) 85
SetI ASST 5 cut(s) 15, 196, 271, 282, 359
SexAI ACCWGGT 1 cut(s) 190
SfoI GGCGCC 1 cut(s) 128
SgrAI CRCCGGYG 1 cut(s) 129
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 118, 260
Sse9I AATT 1 cut(s) 136
SsiI CCGC 1 cut(s) 124
SspDI GGCGCC 1 cut(s) 126
StyD4I CCNGG 4 cut(s) 54, 190, 237, 356
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 136
TauI GCSGC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 2 cut(s) 21, 224
TseI GCWGC 2 cut(s) 10, 59
Tsp45I GTSAC 2 cut(s) 21, 224
TspDTI ATGAA 2 cut(s) 85, 216
TspRI CASTG 1 cut(s) 151
Tth111I GACNNNGTC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.