RLG00000013587

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016232
Physical Location & Seq
Forward (+)
33656902 .. 33657267
366 bp
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UTR
Exon/CDS
Intron
RLM00000013587

Sequence Viewer

Length: 366 bp
ATGGCTCGCCAGCTTCTTCTATCACAGCCCCTACCAAGCACACTTCAAGTCGGCCTGGCTGCTCTGACCCTTCTATGTTGTGCCCTCTCATTGCTCATGTGTGCTTCTCATTCACGCAAATGGCGGCGTCGGTGGAATTCTTGCACCAACTTTTTGGTCGATGATGGTCCAGTTATTCAACATATGCAACCCGGTGACAATGATGAAAGCATGGATGATAGTGGTGATCAAGAAGACCCAGTCTGGCAGAAAAACATACTCATGGGAGGTAAGTGCCAGCTACCAGATTTTTCAGGAGTCATAATCTATGACTCCGAGGGGAACGTTGTCAAGCCTGACAAAACTCCTCGTTTAACCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.54

Weight (kDa)

5.55

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71740
fragaria_vesca FvH4_2g12880
prunus_persica Prupe.8G043200_v2.0.a1
pyrus_communis pycom05g02590
rosa_chinensis RchiOBHm_Chr6g0273981
rosa_laevigata RLG00000013587
rosa_multiflora Rmu_sc0000045.1_g000082 Rmu_sc0013374.1_g000008
rosa_roxburghii Rroxscaffold_7G00194830
rosa_rugosa Rorug06G0077900
rosa_samantha Rh6AG193600 Rh6BG197200 Rh6CG197100 Rh6DG189000
rosa_wichuraiana Rw6G016880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 124
AclI AACGTT 1 cut(s) 324
AcsI RAATTY 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 127
AgsI TTSAA 2 cut(s) 47, 179
AjnI CCWGG 2 cut(s) 54, 356
AluBI AGCT 2 cut(s) 13, 280
AluI AGCT 2 cut(s) 13, 280
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 206, 236
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 2 cut(s) 56, 358
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 1 cut(s) 192
BisI GCNGC 2 cut(s) 60, 125
BlsI GCNGC 2 cut(s) 61, 126
Bme1390I CCNGG 3 cut(s) 56, 192, 358
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmrFI CCNGG 3 cut(s) 56, 192, 358
BmrI ACTGGG 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 315
Bse1I ACTGG 2 cut(s) 170, 239
Bse3DI GCAATG 1 cut(s) 89
BseBI CCWGG 2 cut(s) 56, 358
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 170, 239
BseRI GAGGAG 1 cut(s) 336
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 192
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 89
BsrI ACTGG 2 cut(s) 170, 239
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 127
Bst2UI CCWGG 2 cut(s) 56, 358
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 7, 11, 278
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstNI CCWGG 2 cut(s) 56, 358
BstSCI CCNGG 3 cut(s) 54, 190, 356
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 240
BstXI CCANNNNNNTGG 1 cut(s) 154
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 7, 11, 278
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 116
CviAII CATG 3 cut(s) 97, 211, 262
CviJI RGCY 7 cut(s) 5, 13, 28, 54, 59, 280, 334
CviKI_1 RGCY 7 cut(s) 5, 13, 28, 54, 59, 280, 334
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 54, 356
FaeI CATG 3 cut(s) 100, 214, 265
FaiI YATR 9 cut(s) 76, 98, 183, 185, 212, 257, 263, 302, 309
FatI CATG 3 cut(s) 96, 210, 261
FauNDI CATATG 1 cut(s) 183
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 60, 125
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 60, 125
GluI GCNGC 2 cut(s) 60, 125
HaeIII GGCC 1 cut(s) 54
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 100, 214, 265
HinfI GANTC 2 cut(s) 297, 311
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 206, 236
Hpy188I TCNGA 2 cut(s) 66, 316
Hpy188III TCNNGA 2 cut(s) 230, 294
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 2 cut(s) 144, 187
HpySE526I ACGT 1 cut(s) 324
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 100, 214, 265
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 226
Lsp1109I GCAGC 1 cut(s) 46
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 8, 245
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 1 cut(s) 136
MlyI GAGTC 2 cut(s) 305, 306
MnlI CCTC 4 cut(s) 95, 260, 310, 357
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 2 cut(s) 118, 260
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 3 cut(s) 56, 192, 358
MvaI CCWGG 2 cut(s) 56, 358
NciI CCSGG 1 cut(s) 192
NdeI CATATG 1 cut(s) 183
NdeII GATC 1 cut(s) 226
NlaIII CATG 3 cut(s) 100, 214, 265
NmuCI GTSAC 1 cut(s) 194
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 61, 126
PleI GAGTC 2 cut(s) 305, 305
PpsI GAGTC 2 cut(s) 305, 305
Psp1406I AACGTT 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 54, 356
PspGI CCWGG 2 cut(s) 54, 356
PspPI GGNCC 1 cut(s) 167
PsyI GACNNNGTC 1 cut(s) 239
RseI CAYNNNNRTG 2 cut(s) 118, 260
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 2 cut(s) 60, 125
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 2 cut(s) 305, 306
ScrFI CCNGG 3 cut(s) 56, 192, 358
SduI GDGCHC 1 cut(s) 85
SetI ASST 5 cut(s) 15, 271, 282, 327, 359
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 118, 260
Sse9I AATT 1 cut(s) 136
SsiI CCGC 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 54, 190, 356
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 136
TauI GCSGC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 219
Tth111I GACNNNGTC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.