Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016232

Physical Location & Seq

Genomic Coordinates Reverse (-)

37134518 .. 37134883

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG197200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTCGCCAGCTTCTTCTATCACAGCCCCTACCAAGCACACTTCAAGTCGGCCTGGCTGCTCTGACCCTTCTATGTTGTGCCCTCTCATTGTTCATGTGTGCTTCTCATTCCCGCAAATGGCGGCGTCGGTGGAATTCTTGCACCAACTTTTTGGTCGATGATGGTCCAGTTATACAACATATGCAGCCAGGTGACAATGATGAAAGCATGGATGATAGTGGTGATCAAGAAGACCCAGTCTGGCAGAAAAAAATACTCATGGGAGGTAAGTGCCAGCTACCAGATTTTTCAGGAGTCATAATCTATGACTCCGAGGGGAACGTCACCAAGCCTGACAAAACTCCTCGTTTAACCTGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

6.05

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71740
fragaria_vesca	FvH4_2g12880
prunus_persica	Prupe.8G043200_v2.0.a1
pyrus_communis	pycom05g02590
rosa_chinensis	RchiOBHm_Chr6g0273981
rosa_laevigata	RLG00000013587
rosa_multiflora	Rmu_sc0000045.1_g000082 Rmu_sc0013374.1_g000008
rosa_roxburghii	Rroxscaffold_7G00194830
rosa_rugosa	Rorug06G0077900
rosa_samantha	Rh6AG193600 Rh6BG197200 Rh6CG197100 Rh6DG189000
rosa_wichuraiana	Rw6G016880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	115, 124
AcsI	RAATTY	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	3 cut(s)	54, 190, 356
AluBI	AGCT	2 cut(s)	13, 280
AluI	AGCT	2 cut(s)	13, 280
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	59, 187
ApoI	RAATTY	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	206, 236, 319
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	46, 199
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	3 cut(s)	56, 192, 358
BclI	TGATCA	1 cut(s)	226
BisI	GCNGC	3 cut(s)	60, 125, 188
BlsI	GCNGC	3 cut(s)	61, 126, 189
Bme1390I	CCNGG	3 cut(s)	56, 192, 358
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmrFI	CCNGG	3 cut(s)	56, 192, 358
BmrI	ACTGGG	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	170, 239
BseBI	CCWGG	3 cut(s)	56, 192, 358
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	170, 239
BseRI	GAGGAG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	46, 199
BshFI	GGCC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	120
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	115, 124
BspANI	GGCC	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	170, 239
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	127
Bst2UI	CCWGG	3 cut(s)	56, 192, 358
BstACI	GRCGYC	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	7, 11, 278
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstNI	CCWGG	3 cut(s)	56, 192, 358
BstSCI	CCNGG	3 cut(s)	54, 190, 356
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	46, 199
BstV2I	GAAGAC	1 cut(s)	240
BstXI	CCANNNNNNTGG	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	7, 11, 278
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	116
CviAII	CATG	3 cut(s)	97, 211, 262
CviJI	RGCY	8 cut(s)	5, 13, 28, 54, 59, 190, 280, 334
CviKI_1	RGCY	8 cut(s)	5, 13, 28, 54, 59, 190, 280, 334
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	3 cut(s)	54, 190, 356
FaeI	CATG	3 cut(s)	100, 214, 265
FaiI	YATR	9 cut(s)	76, 98, 176, 183, 185, 212, 263, 302, 309
FatI	CATG	3 cut(s)	96, 210, 261
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	60, 125, 188
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	60, 125, 188
GluI	GCNGC	3 cut(s)	60, 125, 188
HaeIII	GGCC	1 cut(s)	54
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	100, 214, 265
HinfI	GANTC	2 cut(s)	297, 311
HphI	GGTGA	3 cut(s)	206, 236, 319
Hpy188I	TCNGA	2 cut(s)	66, 316
Hpy188III	TCNNGA	2 cut(s)	230, 294
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	144, 187
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	127
Hsp92II	CATG	3 cut(s)	100, 214, 265
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	226
Lsp1109I	GCAGC	2 cut(s)	46, 199
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	194, 325
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	8, 245
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	305, 306
MnlI	CCTC	4 cut(s)	95, 260, 310, 357
MseI	TTAA	1 cut(s)	353
MspR9I	CCNGG	3 cut(s)	56, 192, 358
MvaI	CCWGG	3 cut(s)	56, 192, 358
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	100, 214, 265
NmuCI	GTSAC	2 cut(s)	194, 325
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	61, 126, 189
PleI	GAGTC	2 cut(s)	305, 305
PpsI	GAGTC	2 cut(s)	305, 305
Psp6I	CCWGG	3 cut(s)	54, 190, 356
PspGI	CCWGG	3 cut(s)	54, 190, 356
PspPI	GGNCC	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	3 cut(s)	60, 125, 188
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	305, 306
ScrFI	CCNGG	3 cut(s)	56, 192, 358
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	6 cut(s)	15, 196, 271, 282, 327, 359
SinI	GGWCC	1 cut(s)	167
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	115, 124
StyD4I	CCNGG	3 cut(s)	54, 190, 356
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseFI	GTSAC	2 cut(s)	194, 325
TseI	GCWGC	2 cut(s)	59, 187
Tsp45I	GTSAC	2 cut(s)	194, 325
TspDTI	ATGAA	2 cut(s)	85, 219
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.