Prupe.8G043200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016232
Physical Location & Seq
Forward (+)
4486391 .. 4486964
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G043200.1

Sequence Viewer

Length: 369 bp
ATGGCTCGCCATCTTCTTTTGACACACCCTGTACCAAGCGCATTTCAAGTCGGCCTGGCCGCCATGACCCTTGCATTTTGTGCCATGGCATTGCTCATGTGTGCATCCCATTCGCGTAAATGGCGTCGTCATTGGAATGCTTGCACTGATTTTTTCGAAGATGATCCTGTTATTGAACACATTCAACCCGGAAACTATGATGCAGGCATGGAGGATACTAATAGTGGTGAGCTAGAAGACTCGGTCTGGCAGAAGAACATACTCATGGGTGGTAAGTGTCAGCTACCAGATTTTTCTGGTGTCATAATCTACGACTCTGATGGGAACATTGTCAAGCCTGACAAAACTCCTCGTTTAACCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.72

Weight (kDa)

5.63

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71740
fragaria_vesca FvH4_2g12880
prunus_persica Prupe.8G043200_v2.0.a1
pyrus_communis pycom05g02590
rosa_chinensis RchiOBHm_Chr6g0273981
rosa_laevigata RLG00000013587
rosa_multiflora Rmu_sc0000045.1_g000082 Rmu_sc0013374.1_g000008
rosa_roxburghii Rroxscaffold_7G00194830
rosa_rugosa Rorug06G0077900
rosa_samantha Rh6AG193600 Rh6BG197200 Rh6CG197100 Rh6DG189000
rosa_wichuraiana Rw6G016880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 115
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 1 cut(s) 33
AgsI TTSAA 3 cut(s) 47, 176, 185
AjnI CCWGG 2 cut(s) 54, 359
AluBI AGCT 2 cut(s) 232, 283
AluI AGCT 2 cut(s) 232, 283
AlwI GGATC 1 cut(s) 158
AoxI GGCC 2 cut(s) 52, 57
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 239
AsuII TTCGAA 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 243
BccI CCATC 2 cut(s) 18, 314
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BciT130I CCWGG 2 cut(s) 56, 361
BciVI GTATCC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 233
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 3 cut(s) 56, 189, 361
BmrFI CCNGG 3 cut(s) 56, 189, 361
BmsI GCATC 2 cut(s) 113, 190
BpiI GAAGAC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 89
BseBI CCWGG 2 cut(s) 56, 361
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 54, 59
BsiSI CCGG 1 cut(s) 189
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 54, 59
Bsp119I TTCGAA 1 cut(s) 156
Bsp143I GATC 1 cut(s) 163
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 1 cut(s) 60
BspANI GGCC 2 cut(s) 54, 59
BspFNI CGCG 1 cut(s) 115
BspPI GGATC 1 cut(s) 158
BspT104I TTCGAA 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 163
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 56, 361
BstACI GRCGYC 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 7, 142, 205
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 104
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 80, 121
BstNI CCWGG 2 cut(s) 56, 361
BstSCI CCNGG 3 cut(s) 54, 187, 359
BstUI CGCG 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 243
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 54, 59
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 3 cut(s) 7, 142, 205
CfoI GCGC 1 cut(s) 41
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 32
CviAII CATG 5 cut(s) 64, 85, 97, 208, 265
CviJI RGCY 6 cut(s) 5, 54, 59, 232, 283, 337
CviKI_1 RGCY 6 cut(s) 5, 54, 59, 232, 283, 337
CviQI GTAC 1 cut(s) 32
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 84
EcoRII CCWGG 2 cut(s) 54, 359
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 5 cut(s) 67, 88, 100, 211, 268
FaiI YATR 8 cut(s) 65, 86, 98, 198, 209, 260, 266, 305
FatI CATG 5 cut(s) 63, 84, 96, 207, 264
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 2 cut(s) 54, 59
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 5 cut(s) 67, 88, 100, 211, 268
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 2 cut(s) 239, 314
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 129
HpyCH4V TGCA 4 cut(s) 74, 104, 144, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 121
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 5 cut(s) 67, 88, 100, 211, 268
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 163
LweI GCATC 2 cut(s) 113, 190
MaeI CTAG 1 cut(s) 233
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 4 cut(s) 5, 170, 248, 265
MlyI GAGTC 2 cut(s) 233, 308
MnlI CCTC 2 cut(s) 205, 360
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 2 cut(s) 135, 263
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 3 cut(s) 56, 189, 361
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 2 cut(s) 56, 361
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 80, 121
NciI CCSGG 1 cut(s) 189
NcoI CCATGG 1 cut(s) 84
NdeII GATC 1 cut(s) 163
NlaIII CATG 5 cut(s) 67, 88, 100, 211, 268
NspV TTCGAA 1 cut(s) 156
PctI GAATGC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 2 cut(s) 233, 308
PpsI GAGTC 2 cut(s) 233, 308
Psp6I CCWGG 2 cut(s) 54, 359
PspGI CCWGG 2 cut(s) 54, 359
PsyI GACNNNGTC 1 cut(s) 242
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
RseI CAYNNNNRTG 2 cut(s) 135, 263
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 2 cut(s) 233, 308
ScrFI CCNGG 3 cut(s) 56, 189, 361
SetI ASST 3 cut(s) 234, 285, 362
SfaNI GCATC 2 cut(s) 113, 190
SfuI TTCGAA 1 cut(s) 156
SmiMI CAYNNNNRTG 2 cut(s) 135, 263
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 3 cut(s) 54, 187, 359
StyI CCWWGG 1 cut(s) 84
TaqI TCGA 1 cut(s) 156
TaqII GACCGA 1 cut(s) 232
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 151
TspRI CASTG 1 cut(s) 151
Tth111I GACNNNGTC 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.