pycom05g02590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016232
Physical Location & Seq
Forward (+)
3087899 .. 3088261
363 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02590.1

Sequence Viewer

Length: 363 bp
ATGGCTCGCAACCTTCTTTTGACACACTCTCTACCGACCACATTTCAACTCGCCCTGGCCGCGATCACCCTCGCATTTTGTGCCATGGCATTGCTCATGTGTGCTTCTCATTCGCGTAGCTGGCGACGCCGCTGGATCGCTTGCACCGAATTTTTTGACGATGATCCTGTTATCCAACACATTCAGCCTGGAAACTATGATGCAAGTATGGATAGTGATGAGCAGGAAGAGGACCCGGTCTGGCAGAAGAACATACTCATGGGTGGAAAGTGCCAGCTACCAGATTTTTCGGGTGTCATAATCTACGATGCTGAGGGGAACATCGTCAAGCCTGACAAGACTCCTCGTTTAACCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.63

Weight (kDa)

5.2

Isoelectric Point (pI)

68.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71740
fragaria_vesca FvH4_2g12880
prunus_persica Prupe.8G043200_v2.0.a1
pyrus_communis pycom05g02590
rosa_chinensis RchiOBHm_Chr6g0273981
rosa_laevigata RLG00000013587
rosa_multiflora Rmu_sc0000045.1_g000082 Rmu_sc0013374.1_g000008
rosa_roxburghii Rroxscaffold_7G00194830
rosa_rugosa Rorug06G0077900
rosa_samantha Rh6AG193600 Rh6BG197200 Rh6CG197100 Rh6DG189000
rosa_wichuraiana Rw6G016880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 62, 115
AciI CCGC 2 cut(s) 60, 130
AclWI GGATC 2 cut(s) 143, 158
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 127
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 3 cut(s) 54, 187, 353
AluBI AGCT 2 cut(s) 120, 277
AluI AGCT 2 cut(s) 120, 277
AlwI GGATC 2 cut(s) 143, 158
AoxI GGCC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 232
BbvCI CCTCAGC 1 cut(s) 312
BciT130I CCWGG 3 cut(s) 56, 189, 355
BcnI CCSGG 1 cut(s) 236
BisI GCNGC 2 cut(s) 60, 130
BlsI GCNGC 2 cut(s) 61, 131
Bme1390I CCNGG 4 cut(s) 56, 189, 236, 355
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 4 cut(s) 56, 189, 236, 355
BmsI GCATC 2 cut(s) 190, 298
Bpu10I CCTNAGC 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 54, 84
Bse3DI GCAATG 1 cut(s) 89
BseBI CCWGG 3 cut(s) 56, 189, 355
BseDI CCNNGG 2 cut(s) 54, 84
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 333
Bsh1236I CGCG 2 cut(s) 62, 115
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 236
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 63, 135, 163
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 2 cut(s) 60, 130
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 2 cut(s) 62, 115
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 2 cut(s) 143, 158
BsrDI GCAATG 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 54, 84
BssMI GATC 3 cut(s) 63, 135, 163
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 3 cut(s) 56, 189, 355
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 4 cut(s) 7, 122, 142, 275
BstDEI CTNAG 1 cut(s) 312
BstDSI CCRYGG 1 cut(s) 84
BstFNI CGCG 2 cut(s) 62, 115
BstKTI GATC 3 cut(s) 66, 138, 166
BstMBI GATC 3 cut(s) 63, 135, 163
BstMWI GCNNNNNNNGC 4 cut(s) 59, 80, 121, 126
BstNI CCWGG 3 cut(s) 56, 189, 355
BstSCI CCNGG 4 cut(s) 54, 187, 234, 353
BstUI CGCG 2 cut(s) 62, 115
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 84
Cac8I GCNNGC 4 cut(s) 7, 122, 142, 275
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 135
CviAII CATG 3 cut(s) 85, 97, 259
CviJI RGCY 6 cut(s) 5, 59, 120, 187, 277, 331
CviKI_1 RGCY 6 cut(s) 5, 59, 120, 187, 277, 331
DdeI CTNAG 1 cut(s) 312
DpnI GATC 3 cut(s) 65, 137, 165
DpnII GATC 3 cut(s) 63, 135, 163
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 3 cut(s) 54, 187, 353
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 3 cut(s) 88, 100, 262
FaiI YATR 7 cut(s) 86, 98, 198, 209, 254, 260, 299
FatI CATG 3 cut(s) 84, 96, 258
Fnu4HI GCNGC 2 cut(s) 60, 130
Fsp4HI GCNGC 2 cut(s) 60, 130
GluI GCNGC 2 cut(s) 60, 130
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 88, 100, 262
HinfI GANTC 1 cut(s) 340
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 144, 203
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 80, 121, 126
HpyF3I CTNAG 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 88, 100, 262
Kzo9I GATC 3 cut(s) 63, 135, 163
LweI GCATC 2 cut(s) 190, 298
MalI GATC 3 cut(s) 65, 137, 165
MboI GATC 3 cut(s) 63, 135, 163
MboII GAAGA 2 cut(s) 239, 259
MluCI AATT 1 cut(s) 149
MlyI GAGTC 1 cut(s) 334
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 4 cut(s) 80, 223, 307, 354
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 4 cut(s) 56, 189, 236, 355
MvaI CCWGG 3 cut(s) 56, 189, 355
MvnI CGCG 2 cut(s) 62, 115
MwoI GCNNNNNNNGC 4 cut(s) 59, 80, 121, 126
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 84
NdeII GATC 3 cut(s) 63, 135, 163
NlaIII CATG 3 cut(s) 88, 100, 262
NlaIV GGNNCC 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 61, 131
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 3 cut(s) 54, 187, 353
PspGI CCWGG 3 cut(s) 54, 187, 353
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 60, 130
Sau3AI GATC 3 cut(s) 63, 135, 163
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 4 cut(s) 56, 189, 236, 355
SetI ASST 4 cut(s) 15, 122, 279, 356
SfaNI GCATC 2 cut(s) 190, 298
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 1 cut(s) 149
SsiI CCGC 2 cut(s) 60, 130
StyD4I CCNGG 4 cut(s) 54, 187, 234, 353
StyI CCWWGG 1 cut(s) 84
TasI AATT 1 cut(s) 149
TauI GCSGC 2 cut(s) 62, 132
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.