Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017510

Physical Location & Seq

Genomic Coordinates Forward (+)

27815627 .. 27816468

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73965.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCGACGACTAGAGTCTCACATGTCTTAGGGTTTCTTCTATGGATCTCTCTTCTCATCTTCGTCTCCATAGGGTTGTTTGGCAATTTCAGCTCCAAACCCATAAACCCTTTTCCTTCTCCGGTTATTACCTTGCCGGCCCTTTACTACCGGCCGGGAAGAAGAGCTTTGGCGGTGAAAACGTTTGACTTCACACCGTTCTTGAAAGATCTTCGCCGGAGTAATCATCGGAAAGCTTTGCCGGCGGGAGGATCCGAGATTGACCCGAGATATGGCGTTGAAAAACGACTCGTCCCATCTGGTCCAAACCCCTTGCACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.95

Weight (kDa)

10.97

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73965
fragaria_vesca	FvH4_5g12751
malus_domestica	MD06G1210600.v1.1 MD14G1221300.v1.1
prunus_persica	Prupe.5G216700_v2.0.a1
pyrus_communis	pycom06g18810 pycom14g18310
rosa_laevigata	RLG00000004969
rosa_roxburghii	Rroxscaffold_3G00269540
rosa_samantha	Rh7CG068400 Rh7DG067900
rosa_wichuraiana	Rw7G005590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	173, 245
AclI	AACGTT	1 cut(s)	182
AclWI	GGATC	3 cut(s)	53, 246, 259
AcoI	YGGCCR	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	248, 272
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	205, 281
AluBI	AGCT	3 cut(s)	93, 167, 236
AluI	AGCT	3 cut(s)	93, 167, 236
Alw26I	GTCTC	2 cut(s)	22, 70
AlwI	GGATC	3 cut(s)	53, 246, 259
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	2 cut(s)	138, 152
AspS9I	GGNCC	2 cut(s)	139, 302
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	251
BccI	CCATC	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	22, 70
BfaI	CTAG	1 cut(s)	12
BglII	AGATCT	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	139, 302
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	156
BoxI	GACNNNNGTC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 272
Bse118I	RCCGGY	3 cut(s)	136, 150, 241
BseLI	CCNNNNNNNGG	2 cut(s)	248, 272
BseX3I	CGGCCG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	140, 154
BsiEI	CGRYCG	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	6 cut(s)	122, 137, 151, 155, 217, 242
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	248, 272
BsmAI	GTCTC	2 cut(s)	22, 70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	140, 154
BsoBI	CYCGRG	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	45, 208, 251
BspACI	CCGC	2 cut(s)	173, 245
BspANI	GGCC	2 cut(s)	140, 154
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	3 cut(s)	53, 246, 259
BspQI	GCTCTTC	1 cut(s)	157
BsrFI	RCCGGY	3 cut(s)	136, 150, 241
BssAI	RCCGGY	3 cut(s)	136, 150, 241
BssMI	GATC	3 cut(s)	45, 208, 251
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	57, 157
BstC8I	GCNNGC	2 cut(s)	138, 243
BstDEI	CTNAG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	48, 211, 254
BstMAI	GTCTC	2 cut(s)	22, 70
BstMBI	GATC	3 cut(s)	45, 208, 251
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 242
BstNSI	RCATGY	1 cut(s)	26
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	154
BstX2I	RGATCY	3 cut(s)	45, 208, 251
BstYI	RGATCY	3 cut(s)	45, 208, 251
BstZI	CGGCCG	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	140, 154
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	138, 243
Cfr10I	RCCGGY	3 cut(s)	136, 150, 241
Cfr13I	GGNCC	2 cut(s)	139, 302
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	5 cut(s)	93, 140, 154, 167, 236
CviKI_1	RGCY	5 cut(s)	93, 140, 154, 167, 236
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	3 cut(s)	47, 210, 253
DpnII	GATC	3 cut(s)	45, 208, 251
EaeI	YGGCCR	1 cut(s)	152
EagI	CGGCCG	1 cut(s)	152
Eam1104I	CTCTTC	2 cut(s)	57, 157
EarI	CTCTTC	2 cut(s)	57, 157
EclXI	CGGCCG	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	302
Eco52I	CGGCCG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	1 cut(s)	26
FaiI	YATR	5 cut(s)	24, 43, 71, 104, 273
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	1 cut(s)	22
FauI	CCCGC	1 cut(s)	238
FspBI	CTAG	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	140, 154
HapII	CCGG	6 cut(s)	122, 137, 151, 155, 217, 242
Hin1II	CATG	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	15, 288
HpaII	CCGG	6 cut(s)	122, 137, 151, 155, 217, 242
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	231, 256
Hpy188III	TCNNGA	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 242
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	26
KroI	GCCGGC	2 cut(s)	136, 241
KroNI	GCCGGC	2 cut(s)	138, 243
Kzo9I	GATC	3 cut(s)	45, 208, 251
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	7 cut(s)	135, 150, 164, 168, 230, 255, 285
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	182
MalI	GATC	3 cut(s)	47, 210, 253
MboI	GATC	3 cut(s)	45, 208, 251
MboII	GAAGA	6 cut(s)	29, 44, 52, 171, 174, 203
MflI	RGATCY	3 cut(s)	45, 208, 251
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	24, 282
MnlI	CCTC	1 cut(s)	242
MroNI	GCCGGC	2 cut(s)	136, 241
MspI	CCGG	6 cut(s)	122, 137, 151, 155, 217, 242
MspR9I	CCNGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	90, 242
NaeI	GCCGGC	2 cut(s)	138, 243
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	45, 208, 251
NgoMIV	GCCGGC	2 cut(s)	136, 241
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	26
PciI	ACATGT	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	157
PdiI	GCCGGC	2 cut(s)	138, 243
PleI	GAGTC	2 cut(s)	23, 282
PpsI	GAGTC	2 cut(s)	23, 282
PscI	ACATGT	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	14
Psp1406I	AACGTT	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	139, 302
PsuI	RGATCY	3 cut(s)	45, 208, 251
SapI	GCTCTTC	1 cut(s)	157
Sau3AI	GATC	3 cut(s)	45, 208, 251
Sau96I	GGNCC	2 cut(s)	139, 302
SchI	GAGTC	2 cut(s)	24, 282
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	5 cut(s)	95, 134, 169, 185, 238
SinI	GGWCC	1 cut(s)	302
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	173, 245
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	185
TasI	AATT	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	302
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.