Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0017510

Physical Location & Seq

Genomic Coordinates Reverse (-)

34340307 .. 34340672

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1210600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTTCCAAACTTCTTATTCCTCGTCTCTTTAGTCTCATGCTTTGGCTCTCATTGATCTTGTTATCCGTCCACGGTTGGTTTCATCTCGTTTCCAAAAATAGCAGTAACCACATAAACCCTACGCAAGCAGCAGCATATTCTCTCAGCAGCTCCGATCGTCGTTACACTTTGAGCAACCGGAAAGTACTATTGGCTTCTAAATTTGACTTTGCCCCATTTGTCCACCGGAACCAGCAACGTCAAAAGGATCATCCTTACAAATATGTGCCTGTGCGGCCAGAGCCGGGCGGAACGGAGATCAACCCTCGTTACGGTTCTGAAATGCGCCTTGTTCCCACCGGTCCAAACCCATTGCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.87

Weight (kDa)

10.38

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73965
fragaria_vesca	FvH4_5g12751
malus_domestica	MD06G1210600.v1.1 MD14G1221300.v1.1
prunus_persica	Prupe.5G216700_v2.0.a1
pyrus_communis	pycom06g18810 pycom14g18310
rosa_laevigata	RLG00000004969
rosa_roxburghii	Rroxscaffold_3G00269540
rosa_samantha	Rh7CG068400 Rh7DG067900
rosa_wichuraiana	Rw7G005590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	277, 291
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	287, 314
AgeI	ACCGGT	1 cut(s)	341
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	32, 41
AlwI	GGATC	1 cut(s)	258
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	131, 134, 150
ApoI	RAATTY	1 cut(s)	203
AsiGI	ACCGGT	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	344
BbvI	GCAGC	3 cut(s)	143, 146, 162
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	32, 41
BglI	GCCNNNNNGGC	1 cut(s)	277
BisI	GCNGC	4 cut(s)	132, 135, 151, 278
BlsI	GCNGC	4 cut(s)	133, 136, 152, 279
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	3 cut(s)	180, 228, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 314
Bse118I	RCCGGY	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	287, 314
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	143, 146, 162
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	280
BshTI	ACCGGT	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	4 cut(s)	181, 229, 287, 342
BslI	CCNNNNNNNGG	2 cut(s)	287, 314
BsmAI	GTCTC	2 cut(s)	32, 41
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	57, 157, 250, 300
BspACI	CCGC	2 cut(s)	277, 291
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	4 cut(s)	57, 157, 250, 300
Bst4CI	ACNGT	2 cut(s)	77, 317
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	4 cut(s)	60, 160, 253, 303
BstMAI	GTCTC	2 cut(s)	32, 41
BstMBI	GATC	4 cut(s)	57, 157, 250, 300
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 283
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	3 cut(s)	143, 146, 162
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	188
CspAI	ACCGGT	1 cut(s)	341
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	6 cut(s)	5, 49, 153, 197, 280, 286
CviKI_1	RGCY	6 cut(s)	5, 49, 153, 197, 280, 286
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	4 cut(s)	59, 159, 252, 302
DpnII	GATC	4 cut(s)	57, 157, 250, 300
EaeI	YGGCCR	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	344
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	43
FaiI	YATR	4 cut(s)	41, 116, 139, 267
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	132, 135, 151, 278
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	4 cut(s)	132, 135, 151, 278
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	4 cut(s)	132, 135, 151, 278
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	4 cut(s)	181, 229, 287, 342
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HpaII	CCGG	4 cut(s)	181, 229, 287, 342
Hpy166II	GTNNAC	2 cut(s)	73, 226
Hpy188I	TCNGA	2 cut(s)	157, 322
Hpy8I	GTNNAC	2 cut(s)	73, 226
Hpy99I	CGWCG	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	77, 317
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 283
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	57, 157, 250, 300
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	7 cut(s)	194, 242, 248, 285, 294, 300, 355
Lsp1109I	GCAGC	3 cut(s)	143, 146, 162
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	3 cut(s)	107, 164, 311
MalI	GATC	4 cut(s)	59, 159, 252, 302
MboI	GATC	4 cut(s)	57, 157, 250, 300
MluCI	AATT	1 cut(s)	203
MnlI	CCTC	2 cut(s)	33, 318
MspI	CCGG	4 cut(s)	181, 229, 287, 342
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	277, 283
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	57, 157, 250, 300
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	233
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	133, 136, 152, 279
Ple19I	CGATCG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SatI	GCNGC	4 cut(s)	132, 135, 151, 278
Sau3AI	GATC	4 cut(s)	57, 157, 250, 300
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	2 cut(s)	155, 244
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	1 cut(s)	203
SsiI	CCGC	2 cut(s)	277, 291
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	77, 317
TaiI	ACGT	1 cut(s)	244
TasI	AATT	1 cut(s)	203
TatI	WGTACW	1 cut(s)	187
TauI	GCSGC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	131, 134, 150
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	2 cut(s)	58, 311
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.