Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017510

Physical Location & Seq

Genomic Coordinates Forward (+)

7204778 .. 7205671

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12751.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCACGACAATGCTGCCCCCTCCTCTCCGCATCAACTGGCCTTTGCCTTCACACTAGCTCCATGCACTACCACTCTCTTCCCCACCATGCCTTCCAAGCTCTCACATCTTTTTAATCTCATTATCTACCTCTCTTTGCTCTTCTTATTCCTTCATGGCTGGTTCCATTTCTCTAATTCCAAGCACAGCACTGTCTCCATCAACACGAGCAGCAGGAAGTTATTGAGTACTACCGAATTCGACTTCACCCCATTTGTCCGCCGGCGTCAACAACATCAGCATCAGCATCACAGACACCCTCCACCGCTGCCGGAGCCGGGAAAAAGCGAGCTCGACCCTCGTTATGGCGTCGAACAGCGCCTTGTTCCCACTGGTCCAAACCCATTGCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.05

Weight (kDa)

9.74

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73965
fragaria_vesca	FvH4_5g12751
malus_domestica	MD06G1210600.v1.1 MD14G1221300.v1.1
prunus_persica	Prupe.5G216700_v2.0.a1
pyrus_communis	pycom06g18810 pycom14g18310
rosa_laevigata	RLG00000004969
rosa_roxburghii	Rroxscaffold_3G00269540
rosa_samantha	Rh7CG068400 Rh7DG067900
rosa_wichuraiana	Rw7G005590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	29, 259, 305
AcsI	RAATTY	1 cut(s)	236
AcyI	GRCGYC	2 cut(s)	265, 348
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	317, 344
AluBI	AGCT	3 cut(s)	59, 100, 331
AluI	AGCT	3 cut(s)	59, 100, 331
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	14, 210, 307
ApoI	RAATTY	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	222, 294
BccI	CCATC	1 cut(s)	206
BcgI	CGANNNNNNTGC	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	361
BisI	GCNGC	3 cut(s)	15, 211, 308
BlsI	GCNGC	3 cut(s)	16, 212, 309
BmcAI	AGTACT	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	164, 315
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	40, 289, 295
BpuMI	CCSGG	1 cut(s)	318
BsaHI	GRCGYC	2 cut(s)	265, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 344
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	2 cut(s)	42, 376
Bse3DI	GCAATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	2 cut(s)	317, 344
BseMI	GCAATG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	42, 376
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	222, 294
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	262, 311, 317
BslI	CCNNNNNNNGG	2 cut(s)	317, 344
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	333
BspACI	CCGC	3 cut(s)	29, 259, 305
BspANI	GGCC	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	164, 315
BspQI	GCTCTTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	383
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	42, 376
BssAI	RCCGGY	1 cut(s)	261
BssNI	GRCGYC	2 cut(s)	265, 348
BssSI	CACGAG	1 cut(s)	205
Bst2BI	CACGAG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	83, 146
BstACI	GRCGYC	2 cut(s)	265, 348
BstC8I	GCNNGC	2 cut(s)	263, 329
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 313
BstSCI	CCNGG	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	222, 294
BsuRI	GGCC	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	189, 369
Cac8I	GCNNGC	2 cut(s)	263, 329
CfoI	GCGC	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	2 cut(s)	254, 337
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	3 cut(s)	63, 88, 155
CviJI	RGCY	6 cut(s)	41, 59, 100, 159, 316, 331
CviKI_1	RGCY	6 cut(s)	41, 59, 100, 159, 316, 331
CviQI	GTAC	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	83, 146
EarI	CTCTTC	2 cut(s)	83, 146
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	3 cut(s)	66, 91, 158
FaiI	YATR	4 cut(s)	64, 89, 156, 345
FatI	CATG	3 cut(s)	62, 87, 154
Fnu4HI	GCNGC	3 cut(s)	15, 211, 308
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	3 cut(s)	15, 211, 308
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	3 cut(s)	15, 211, 308
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	3 cut(s)	262, 311, 317
HgaI	GACGC	2 cut(s)	254, 337
HhaI	GCGC	1 cut(s)	360
Hin1I	GRCGYC	2 cut(s)	265, 348
Hin1II	CATG	3 cut(s)	66, 91, 158
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HpaII	CCGG	3 cut(s)	262, 311, 317
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	58, 102, 161
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	4, 66, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 313
Hsp92I	GRCGYC	2 cut(s)	265, 348
Hsp92II	CATG	3 cut(s)	66, 91, 158
HspAI	GCGC	1 cut(s)	358
KroI	GCCGGC	1 cut(s)	261
KroNI	GCCGGC	1 cut(s)	263
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	2 cut(s)	64, 313
LpnPI	CCDG	7 cut(s)	23, 145, 199, 275, 324, 330, 357
Lsp1109I	GCAGC	2 cut(s)	222, 294
LweI	GCATC	3 cut(s)	40, 289, 295
MaeI	CTAG	1 cut(s)	56
MboII	GAAGA	2 cut(s)	70, 133
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	2 cut(s)	175, 236
MnlI	CCTC	5 cut(s)	31, 34, 140, 309, 348
MreI	CGCCGGCG	1 cut(s)	261
MroNI	GCCGGC	1 cut(s)	261
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	3 cut(s)	262, 311, 317
MspR9I	CCNGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	97, 313
NaeI	GCCGGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	318
NgoMIV	GCCGGC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	66, 91, 158
NlaIV	GGNNCC	2 cut(s)	164, 315
PciSI	GCTCTTC	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	16, 212, 309
Psp124BI	GAGCTC	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	164, 315
PspPI	GGNCC	1 cut(s)	374
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	15, 211, 308
Sau96I	GGNCC	1 cut(s)	374
ScaI	AGTACT	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	4 cut(s)	61, 102, 132, 333
SfaNI	GCATC	3 cut(s)	40, 289, 295
SgrAI	CRCCGGYG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	175, 236
SsiI	CCGC	3 cut(s)	29, 259, 305
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	3 cut(s)	240, 333, 351
TasI	AATT	2 cut(s)	175, 236
TatI	WGTACW	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	196, 376
TseI	GCWGC	3 cut(s)	14, 210, 307
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	2 cut(s)	196, 376
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	236
XspI	CTAG	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.