Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017510

Physical Location & Seq

Genomic Coordinates Forward (+)

62400456 .. 62400764

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCCTTCCAAGCTTTCTCATCTTTCTAATCTCATTCTCTACCTATCTTTGCTCTTCTTGTTCCTTCATGGCTGGTTCCATTTCTCTAATCCCAAGCACAGCACTATCCCCATTAACACGAGCAACCGGAAGATATTGAGTACCACCAAATTCGACTTCACGCCATTTGTCCGCCGGCGTCAACAACGTCAGCGTCACCAGCACAGACATTCCCCCCAGCAGCCGGAGCCCGGCAGAAGCGAGCTCGACCCTCGTTATGGCGTCGAACAGCGCCTTGTTCCCACTGGTCCAAACCCATTGCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

12.08

Weight (kDa)

11.45

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73965
fragaria_vesca	FvH4_5g12751
malus_domestica	MD06G1210600.v1.1 MD14G1221300.v1.1
prunus_persica	Prupe.5G216700_v2.0.a1
pyrus_communis	pycom06g18810 pycom14g18310
rosa_laevigata	RLG00000004969
rosa_roxburghii	Rroxscaffold_3G00269540
rosa_samantha	Rh7CG068400 Rh7DG067900
rosa_wichuraiana	Rw7G005590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	149
AcyI	GRCGYC	2 cut(s)	178, 261
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	223, 230, 257
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	2 cut(s)	13, 244
AluI	AGCT	2 cut(s)	13, 244
Alw21I	GWGCWC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	287
BanII	GRGCYC	2 cut(s)	231, 246
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	274
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	77, 228
BmrFI	CCNGG	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	231
BsaHI	GRCGYC	2 cut(s)	178, 261
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 230, 257
Bse118I	RCCGGY	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	3 cut(s)	223, 230, 257
BseMI	GCAATG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	127, 175, 224, 231
BslI	CCNNNNNNNGG	3 cut(s)	223, 230, 257
Bsp1286I	GDGCHC	2 cut(s)	231, 246
BspACI	CCGC	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	77, 228
BspQI	GCTCTTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	174
BssNI	GRCGYC	2 cut(s)	178, 261
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	2 cut(s)	178, 261
BstC8I	GCNNGC	2 cut(s)	176, 242
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 199, 226
BstSCI	CCNGG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	176, 242
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	3 cut(s)	167, 182, 250
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	5 cut(s)	13, 72, 223, 229, 244
CviKI_1	RGCY	5 cut(s)	13, 72, 223, 229, 244
CviQI	GTAC	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	231, 246
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoT38I	GRGCYC	2 cut(s)	231, 246
FaeI	CATG	1 cut(s)	71
FaiI	YATR	2 cut(s)	69, 258
FatI	CATG	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	221
FriOI	GRGCYC	2 cut(s)	231, 246
Fsp4HI	GCNGC	1 cut(s)	221
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	221
GsaI	CCCAGC	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	274
HapII	CCGG	4 cut(s)	127, 175, 224, 231
HgaI	GACGC	3 cut(s)	167, 182, 250
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	2 cut(s)	178, 261
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	11
HpaII	CCGG	4 cut(s)	127, 175, 224, 231
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	15, 74
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 199, 226
HpySE526I	ACGT	1 cut(s)	187
Hsp92I	GRCGYC	2 cut(s)	178, 261
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	1 cut(s)	271
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	8 cut(s)	58, 140, 188, 212, 230, 237, 244, 270
Lsp1109I	GCAGC	1 cut(s)	232
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	2 cut(s)	46, 142
MhlI	GDGCHC	2 cut(s)	231, 246
MluCI	AATT	1 cut(s)	149
MnlI	CCTC	1 cut(s)	261
MreI	CGCCGGCG	1 cut(s)	174
MroNI	GCCGGC	1 cut(s)	174
MseI	TTAA	1 cut(s)	114
MspI	CCGG	4 cut(s)	127, 175, 224, 231
MspR9I	CCNGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	10, 199, 226
NaeI	GCCGGC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	231
NgoMIV	GCCGGC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	2 cut(s)	77, 228
NmuCI	GTSAC	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	59
PdiI	GCCGGC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	77, 228
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	231, 246
SetI	ASST	4 cut(s)	15, 45, 190, 246
SgrAI	CRCCGGYG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	287
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	1 cut(s)	172
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	229
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	153, 246, 264
TasI	AATT	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.