MD14G1221300.v1.1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0017510
Physical Location & Seq
Reverse (-)
30306233 .. 30306589
357 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1221300.v1.1.491

Sequence Viewer

Length: 357 bp
ATGGCTTCCAAGCTTCTTATCCCTCGCCTTTTTAGTCTCATGCTTTGGCTCTCATTGCTCTTCTTATCCGTCCACGGTTGGTTTCATCTCGTTTCCAAAAATAGCCACATAAACCCTACGCAAGCAGCAGCATATCCTCTCAGCAGCTCCGATCGTCGTTACACTTTGAGCAACCGGAAAGTACTACTGGCTTCTAAATTCGACTTTTCCCCATTTGTCCACCGGCACCGGCATCATCAGAAGCATCATCCTTACAAACATGTGCCTGTGCGGCCGGAGCCGGGCGGAACGGAGATCGATCGTTATGGTTCCGAAATGCGCATTGTTCCCACCGGTCCAAACCCATTGCACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.67

Weight (kDa)

10.53

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017510)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73965
fragaria_vesca FvH4_5g12751
malus_domestica MD06G1210600.v1.1 MD14G1221300.v1.1
prunus_persica Prupe.5G216700_v2.0.a1
pyrus_communis pycom06g18810 pycom14g18310
rosa_laevigata RLG00000004969
rosa_roxburghii Rroxscaffold_3G00269540
rosa_samantha Rh7CG068400 Rh7DG067900
rosa_wichuraiana Rw7G005590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 225
AciI CCGC 2 cut(s) 271, 285
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 259
AgeI ACCGGT 1 cut(s) 332
AluBI AGCT 2 cut(s) 13, 147
AluI AGCT 2 cut(s) 13, 147
Alw26I GTCTC 1 cut(s) 41
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 3 cut(s) 125, 128, 144
ApoI RAATTY 1 cut(s) 197
AsiGI ACCGGT 1 cut(s) 332
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 282
AvaII GGWCC 1 cut(s) 335
BanI GGYRCC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 137, 140, 156
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 41
BglI GCCNNNNNGGC 1 cut(s) 271
BisI GCNGC 4 cut(s) 126, 129, 145, 272
BlsI GCNGC 4 cut(s) 127, 130, 146, 273
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 3 cut(s) 227, 279, 310
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 241, 253
BpuMI CCSGG 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 2 cut(s) 174, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 3 cut(s) 222, 228, 332
Bse1I ACTGG 1 cut(s) 192
Bse3DI GCAATG 2 cut(s) 53, 344
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 2 cut(s) 53, 344
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 192
BseX3I CGGCCG 1 cut(s) 272
BseXI GCAGC 3 cut(s) 137, 140, 156
Bsh1285I CGRYCG 3 cut(s) 154, 275, 301
BshFI GGCC 1 cut(s) 274
BshNI GGYRCC 1 cut(s) 225
BshTI ACCGGT 1 cut(s) 332
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 3 cut(s) 154, 275, 301
BsiSI CCGG 6 cut(s) 175, 223, 229, 275, 281, 333
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 274
Bsp143I GATC 3 cut(s) 151, 294, 298
BspACI CCGC 2 cut(s) 271, 285
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 153
BspDI ATCGAT 1 cut(s) 297
BspLI GGNNCC 3 cut(s) 227, 279, 310
BspQI GCTCTTC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 225
BsrDI GCAATG 2 cut(s) 53, 344
BsrFI RCCGGY 3 cut(s) 222, 228, 332
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 3 cut(s) 222, 228, 332
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 3 cut(s) 151, 294, 298
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 3 cut(s) 154, 297, 301
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 151, 294, 298
BstMCI CGRYCG 3 cut(s) 154, 275, 301
BstMWI GCNNNNNNNGC 3 cut(s) 55, 271, 277
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 280
BstV1I GCAGC 3 cut(s) 137, 140, 156
BstZI CGGCCG 1 cut(s) 272
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 1 cut(s) 274
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 1 cut(s) 321
Cfr10I RCCGGY 3 cut(s) 222, 228, 332
Cfr13I GGNCC 1 cut(s) 335
ClaI ATCGAT 1 cut(s) 297
Csp6I GTAC 1 cut(s) 182
CspAI ACCGGT 1 cut(s) 332
CviAII CATG 2 cut(s) 40, 260
CviJI RGCY 8 cut(s) 5, 13, 49, 105, 147, 191, 274, 280
CviKI_1 RGCY 8 cut(s) 5, 13, 49, 105, 147, 191, 274, 280
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 1 cut(s) 140
DpnI GATC 3 cut(s) 153, 296, 300
DpnII GATC 3 cut(s) 151, 294, 298
EaeI YGGCCR 1 cut(s) 272
EagI CGGCCG 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 300
EclXI CGGCCG 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 335
Eco52I CGGCCG 1 cut(s) 272
FaeI CATG 2 cut(s) 43, 263
FaiI YATR 5 cut(s) 41, 110, 133, 261, 306
FatI CATG 2 cut(s) 39, 259
Fnu4HI GCNGC 4 cut(s) 126, 129, 145, 272
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 4 cut(s) 126, 129, 145, 272
FspAI RTGCGCAY 1 cut(s) 320
FspI TGCGCA 1 cut(s) 320
GlaI GCGC 1 cut(s) 320
GluI GCNGC 4 cut(s) 126, 129, 145, 272
HaeIII GGCC 1 cut(s) 274
HapII CCGG 6 cut(s) 175, 223, 229, 275, 281, 333
HhaI GCGC 1 cut(s) 321
Hin1II CATG 2 cut(s) 43, 263
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 11
HpaII CCGG 6 cut(s) 175, 223, 229, 275, 281, 333
Hpy166II GTNNAC 2 cut(s) 73, 220
Hpy188I TCNGA 3 cut(s) 151, 240, 313
Hpy8I GTNNAC 2 cut(s) 73, 220
Hpy99I CGWCG 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 271, 277
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 2 cut(s) 43, 263
HspAI GCGC 1 cut(s) 319
Kzo9I GATC 3 cut(s) 151, 294, 298
LguI GCTCTTC 1 cut(s) 65
LmnI GCTCC 2 cut(s) 152, 277
LpnPI CCDG 8 cut(s) 173, 188, 236, 242, 279, 288, 294, 346
Lsp1109I GCAGC 3 cut(s) 137, 140, 156
LweI GCATC 2 cut(s) 241, 253
MaeIII GTNAC 1 cut(s) 158
MalI GATC 3 cut(s) 153, 296, 300
MboI GATC 3 cut(s) 151, 294, 298
MboII GAAGA 1 cut(s) 52
MluCI AATT 1 cut(s) 197
MnlI CCTC 2 cut(s) 33, 147
MspI CCGG 6 cut(s) 175, 223, 229, 275, 281, 333
MspR9I CCNGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 55, 271, 277
NciI CCSGG 1 cut(s) 282
NdeII GATC 3 cut(s) 151, 294, 298
NlaIII CATG 2 cut(s) 43, 263
NlaIV GGNNCC 3 cut(s) 227, 279, 310
NsbI TGCGCA 1 cut(s) 320
NspI RCATGY 1 cut(s) 263
PciI ACATGT 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 65
PinAI ACCGGT 1 cut(s) 332
PkrI GCNGC 4 cut(s) 127, 130, 146, 273
Ple19I CGATCG 2 cut(s) 154, 301
PscI ACATGT 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 227, 279, 310
PspPI GGNCC 1 cut(s) 335
PvuI CGATCG 2 cut(s) 154, 301
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 65
SatI GCNGC 4 cut(s) 126, 129, 145, 272
Sau3AI GATC 3 cut(s) 151, 294, 298
Sau96I GGNCC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 282
SetI ASST 2 cut(s) 15, 149
SfaNI GCATC 2 cut(s) 241, 253
SinI GGWCC 1 cut(s) 335
Sse9I AATT 1 cut(s) 197
SsiI CCGC 2 cut(s) 271, 285
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 201, 297
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 181
TauI GCSGC 1 cut(s) 274
TseI GCWGC 3 cut(s) 125, 128, 144
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 2 cut(s) 58, 305
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 263
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.