AT1G74670

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017063
Physical Location & Seq
Forward (+)
28053030 .. 28054149
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74670.1

Sequence Viewer

Length: 306 bp
ATGGCCAAACTCATAACTTCTTTTCTCTTACTCACAATTTTATTCACTTTCGTTTGTCTCACTATGTCAAAAGAAGCTGAGTACCATCCAGAAAGTTATGGACCAGGAAGTCTGAAATCATACCAATGTGGAGGACAATGCACAAGGAGATGTAGCAACACAAAGTATCATAAGCCATGCATGTTCTTCTGCCAAAAGTGTTGTGCTAAATGCCTTTGTGTCCCTCCAGGCACGTACGGCAACAAACAAGTGTGTCCTTGTTACAACAACTGGAAGACTCAACAAGGTGGACCAAAATGTCCATAA

Protein Analysis

101

Amino Acids

11.34

Weight (kDa)

9.01

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 42 - 101 7.1e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74670
fragaria_vesca FvH4_5g14950
malus_domestica MD14G1200300.v1.1
prunus_persica Prupe.5G193400_v2.0.a1
pyrus_communis pycom14g16600
rosa_chinensis RchiOBHm_Chr7g0181391
rosa_multiflora Rmu_sc0002060.1_g000012 Rmu_sc0004621.1_g000013
rosa_roxburghii Rroxscaffold_3G00272050
rosa_rugosa Rorug06G0440600
rosa_samantha Rh7AG042800 Rh7BG042100
rosa_wichuraiana Rw7G003560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 108, 297
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 83, 236
AjnI CCWGG 2 cut(s) 103, 226
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 2 cut(s) 101, 290
AvaII GGWCC 2 cut(s) 101, 290
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 281
BccI CCATC 1 cut(s) 93
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 2 cut(s) 105, 228
BcoDI GTCTC 1 cut(s) 62
Bme1390I CCNGG 2 cut(s) 105, 228
Bme18I GGWCC 2 cut(s) 101, 290
BmgT120I GGNCC 2 cut(s) 101, 290
BmrFI CCNGG 2 cut(s) 105, 228
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 275
BseBI CCWGG 2 cut(s) 105, 228
BseGI GGATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 275
BshFI GGCC 1 cut(s) 5
BsiWI CGTACG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 105, 228
BstBAI YACGTR 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 2 cut(s) 105, 228
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 103, 226
BstV2I GAAGAC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 101, 290
Csp6I GTAC 2 cut(s) 82, 235
CviAII CATG 2 cut(s) 177, 181
CviJI RGCY 3 cut(s) 5, 77, 175
CviKI_1 RGCY 3 cut(s) 5, 77, 175
CviQI GTAC 2 cut(s) 82, 235
DdeI CTNAG 1 cut(s) 78
DrdI GACNNNNNNGTC 2 cut(s) 108, 297
DseDI GACNNNNNNGTC 2 cut(s) 108, 297
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 2 cut(s) 101, 290
EcoRII CCWGG 2 cut(s) 103, 226
EcoT22I ATGCAT 1 cut(s) 182
FaeI CATG 2 cut(s) 180, 184
FaiI YATR 8 cut(s) 14, 65, 99, 121, 171, 178, 182, 304
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 176, 180
FokI GGATG 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 180, 184
HinfI GANTC 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 141, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 2 cut(s) 180, 184
LpnPI CCDG 6 cut(s) 90, 102, 117, 213, 240, 256
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 260
MboII GAAGA 2 cut(s) 178, 286
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 2 cut(s) 125, 234
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 182
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 124
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 105, 228
MvaI CCWGG 2 cut(s) 105, 228
MwoI GCNNNNNNNGC 1 cut(s) 237
NlaIII CATG 2 cut(s) 180, 184
NsiI ATGCAT 1 cut(s) 182
NspI RCATGY 1 cut(s) 184
Pfl23II CGTACG 1 cut(s) 234
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 103, 226
PspGI CCWGG 2 cut(s) 103, 226
PspLI CGTACG 1 cut(s) 234
PspPI GGNCC 2 cut(s) 101, 290
RsaI GTAC 2 cut(s) 83, 236
RsaNI GTAC 2 cut(s) 82, 235
RseI CAYNNNNRTG 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 101, 290
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 2 cut(s) 105, 228
SetI ASST 3 cut(s) 79, 236, 289
SinI GGWCC 2 cut(s) 101, 290
SmiMI CAYNNNNRTG 1 cut(s) 124
Sse9I AATT 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 103, 226
TaiI ACGT 1 cut(s) 236
TasI AATT 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 101, 290
XceI RCATGY 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.