Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0017063

Physical Location & Seq

Genomic Coordinates Forward (+)

15779200 .. 15780311

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G193400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCCATGGCTAAGCTTGTCTGCTTTCTTCTTCTAGCTCTCCTTGGGATTTCCATGGTTGCAACACAGGTTATGGCAAAACAAGAAACCCAGTATCACTTGGACAGTGGAAGGTATGGTCCTGGGAGTCTAAAGAGCTACCAATGCCCATCACAATGCACAAGGAGATGTAGCCAGACACAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAATGCTGTGCTAAGTGTCTCTGTGTTCCTCCTGGTTACTATGGCAACAAAGCTGTGTGCCCTTGCTACAACAACTGGAAGACCCAGCAAGGAGGACCCAAATGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0023052 GO:0032870 GO:0033993 GO:0034284 GO:0034285 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080167 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

108

Amino Acids

11.94

Weight (kDa)

9.1

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74670
fragaria_vesca	FvH4_5g14950
malus_domestica	MD14G1200300.v1.1
prunus_persica	Prupe.5G193400_v2.0.a1
pyrus_communis	pycom14g16600
rosa_chinensis	RchiOBHm_Chr7g0181391
rosa_multiflora	Rmu_sc0002060.1_g000012 Rmu_sc0004621.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272050
rosa_rugosa	Rorug06G0440600
rosa_samantha	Rh7AG042800 Rh7BG042100
rosa_wichuraiana	Rw7G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	121, 244
AluBI	AGCT	4 cut(s)	16, 38, 138, 266
AluI	AGCT	4 cut(s)	16, 38, 138, 266
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	2 cut(s)	119, 308
AvaII	GGWCC	2 cut(s)	119, 308
BaeGI	GKGCMC	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	299
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	123, 246
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	35
BlpI	GCTNAGC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	123, 246
Bme18I	GGWCC	2 cut(s)	119, 308
BmgT120I	GGNCC	2 cut(s)	119, 308
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	123, 246
BmrI	ACTGGG	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	6, 43, 54, 122
Bse1I	ACTGG	2 cut(s)	91, 293
BseBI	CCWGG	2 cut(s)	123, 246
BseDI	CCNNGG	4 cut(s)	6, 43, 54, 122
BseNI	ACTGG	2 cut(s)	91, 293
BseSI	GKGCMC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp1720I	GCTNAGC	1 cut(s)	12
Bsp19I	CCATGG	2 cut(s)	6, 54
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	91, 293
BssECI	CCNNGG	4 cut(s)	6, 43, 54, 122
BssT1I	CCWWGG	3 cut(s)	6, 43, 54
Bst2UI	CCWGG	2 cut(s)	123, 246
Bst4CI	ACNGT	2 cut(s)	107, 183
BstDEI	CTNAG	2 cut(s)	12, 225
BstDSI	CCRYGG	2 cut(s)	6, 54
BstMAI	GTCTC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 216
BstNI	CCWGG	2 cut(s)	123, 246
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	121, 244
BstSLI	GKGCMC	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	6, 54
BtsIMutI	CAGTG	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	119, 308
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	4 cut(s)	7, 55, 195, 199
CviJI	RGCY	8 cut(s)	5, 11, 16, 38, 138, 174, 193, 266
CviKI_1	RGCY	8 cut(s)	5, 11, 16, 38, 138, 174, 193, 266
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	12, 225
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	3 cut(s)	6, 43, 54
Eco47I	GGWCC	2 cut(s)	119, 308
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	121, 244
EcoT14I	CCWWGG	3 cut(s)	6, 43, 54
EcoT22I	ATGCAT	1 cut(s)	200
ErhI	CCWWGG	3 cut(s)	6, 43, 54
FaeI	CATG	4 cut(s)	10, 58, 198, 202
FaiI	YATR	7 cut(s)	8, 56, 74, 117, 196, 200, 255
FatI	CATG	4 cut(s)	6, 54, 194, 198
FspBI	CTAG	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	10, 58, 198, 202
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	107, 183
HpyCH4V	TGCA	3 cut(s)	62, 159, 198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 216
HpyF3I	CTNAG	2 cut(s)	12, 225
Hsp92II	CATG	4 cut(s)	10, 58, 198, 202
LpnPI	CCDG	9 cut(s)	53, 104, 108, 135, 188, 231, 258, 274, 311
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	4 cut(s)	20, 23, 196, 304
MhlI	GDGCHC	1 cut(s)	275
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	252, 299
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	154
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	123, 246
MvaI	CCWGG	2 cut(s)	123, 246
MwoI	GCNNNNNNNGC	2 cut(s)	144, 216
NcoI	CCATGG	2 cut(s)	6, 54
NlaIII	CATG	4 cut(s)	10, 58, 198, 202
NlaIV	GGNNCC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	200
NspI	RCATGY	1 cut(s)	202
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	121, 244
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	2 cut(s)	121, 244
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	2 cut(s)	119, 308
PspPPI	RGGWCCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	119, 308
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	123, 246
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	6 cut(s)	18, 40, 72, 116, 140, 268
SinI	GGWCC	2 cut(s)	119, 308
SmiMI	CAYNNNNRTG	1 cut(s)	154
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	121, 244
StyI	CCWWGG	3 cut(s)	6, 43, 54
TaaI	ACNGT	2 cut(s)	107, 183
TscAI	CASTG	1 cut(s)	112
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	119, 308
XceI	RCATGY	1 cut(s)	202
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.