FvH4_5g14950

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017063
Physical Location & Seq
Reverse (-)
8458429 .. 8459455
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14950.t1

Sequence Viewer

Length: 303 bp
ATGGCCATGGCTAAGCTTCTCTGCCTTCTGCTTCTAGCTCTCCTTGGGATTTCCATGGCAGCAGAAACCCAGTATCACTTGGACAGTGCAAGGTACGGACCTGGGAGTCTTAAGAGTTCGCAATGCCCATCACAGTGCACAAGGAGATGTAGCAAAACACAGTACCACAAGCCATGCATGTTCTTCTGCCAGAAATGCTGCGCAAAGTGTCTGTGTGTTCCTCCAGGCTTCTATGGTAACAAAGCTGTGTGCCCTTGCTACAACAACTGGAAGACCCAGCAAGGAGGACCCAAGTGCCCTTGA

Protein Analysis

101

Amino Acids

11.02

Weight (kDa)

9.12

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 41 - 100 2.9e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74670
fragaria_vesca FvH4_5g14950
malus_domestica MD14G1200300.v1.1
prunus_persica Prupe.5G193400_v2.0.a1
pyrus_communis pycom14g16600
rosa_chinensis RchiOBHm_Chr7g0181391
rosa_multiflora Rmu_sc0002060.1_g000012 Rmu_sc0004621.1_g000013
rosa_roxburghii Rroxscaffold_3G00272050
rosa_rugosa Rorug06G0440600
rosa_samantha Rh7AG042800 Rh7BG042100
rosa_wichuraiana Rw7G003560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 105
Acc16I TGCGCA 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 95, 164
AflII CTTAAG 1 cut(s) 110
AjnI CCWGG 2 cut(s) 100, 223
AluBI AGCT 3 cut(s) 16, 38, 245
AluI AGCT 3 cut(s) 16, 38, 245
Alw21I GWGCWC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 136
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 59, 198
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 98, 287
AvaII GGWCC 2 cut(s) 98, 287
BaeGI GKGCMC 3 cut(s) 140, 254, 299
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 71, 185
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 2 cut(s) 102, 225
BfaI CTAG 1 cut(s) 35
BfrI CTTAAG 1 cut(s) 110
BisI GCNGC 2 cut(s) 60, 199
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 2 cut(s) 61, 200
Bme1390I CCNGG 2 cut(s) 102, 225
Bme18I GGWCC 2 cut(s) 98, 287
BmgT120I GGNCC 2 cut(s) 98, 287
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 2 cut(s) 102, 225
BmrI ACTGGG 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 12
BsaJI CCNNGG 4 cut(s) 6, 43, 54, 101
Bse1I ACTGG 2 cut(s) 70, 272
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 102, 225
BseDI CCNNGG 4 cut(s) 6, 43, 54, 101
BseMI GCAATG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 70, 272
BseSI GKGCMC 3 cut(s) 140, 254, 299
BseXI GCAGC 2 cut(s) 71, 185
BseYI CCCAGC 1 cut(s) 276
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 140
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 3 cut(s) 140, 254, 299
Bsp1720I GCTNAGC 1 cut(s) 12
Bsp19I CCATGG 2 cut(s) 6, 54
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 2 cut(s) 70, 272
BssECI CCNNGG 4 cut(s) 6, 43, 54, 101
BssT1I CCWWGG 3 cut(s) 6, 43, 54
Bst2UI CCWGG 2 cut(s) 102, 225
Bst4CI ACNGT 3 cut(s) 86, 135, 162
BstAFI CTTAAG 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 2 cut(s) 6, 54
BstHHI GCGC 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNI CCWGG 2 cut(s) 102, 225
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 100, 223
BstSLI GKGCMC 3 cut(s) 140, 254, 299
BstV1I GCAGC 2 cut(s) 71, 185
BstV2I GAAGAC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 6, 54
BtsIMutI CAGTG 2 cut(s) 91, 140
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 98, 287
Csp6I GTAC 2 cut(s) 94, 163
CviAII CATG 4 cut(s) 7, 55, 174, 178
CviJI RGCY 7 cut(s) 5, 11, 16, 38, 172, 228, 245
CviKI_1 RGCY 7 cut(s) 5, 11, 16, 38, 172, 228, 245
CviQI GTAC 2 cut(s) 94, 163
DdeI CTNAG 1 cut(s) 12
DrdI GACNNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 6, 43, 54
Eco47I GGWCC 2 cut(s) 98, 287
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 100, 223
EcoT14I CCWWGG 3 cut(s) 6, 43, 54
EcoT22I ATGCAT 1 cut(s) 179
ErhI CCWWGG 3 cut(s) 6, 43, 54
FaeI CATG 4 cut(s) 10, 58, 177, 181
FaiI YATR 5 cut(s) 8, 56, 175, 179, 234
FatI CATG 4 cut(s) 6, 54, 173, 177
Fnu4HI GCNGC 2 cut(s) 60, 199
Fsp4HI GCNGC 2 cut(s) 60, 199
FspBI CTAG 1 cut(s) 35
FspI TGCGCA 1 cut(s) 202
GlaI GCGC 1 cut(s) 202
GluI GCNGC 2 cut(s) 60, 199
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 203
Hin1II CATG 4 cut(s) 10, 58, 177, 181
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 86, 135, 162
HpyCH4V TGCA 3 cut(s) 89, 138, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 4 cut(s) 10, 58, 177, 181
HspAI GCGC 1 cut(s) 201
LpnPI CCDG 8 cut(s) 83, 87, 114, 203, 210, 237, 253, 290
Lsp1109I GCAGC 2 cut(s) 71, 185
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 236
MboII GAAGA 2 cut(s) 175, 283
MhlI GDGCHC 3 cut(s) 140, 254, 299
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 2 cut(s) 231, 278
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 179
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 110
MspR9I CCNGG 2 cut(s) 102, 225
MvaI CCWGG 2 cut(s) 102, 225
MwoI GCNNNNNNNGC 1 cut(s) 195
NcoI CCATGG 2 cut(s) 6, 54
NlaIII CATG 4 cut(s) 10, 58, 177, 181
NlaIV GGNNCC 1 cut(s) 289
NsbI TGCGCA 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 179
NspI RCATGY 1 cut(s) 181
PkrI GCNGC 2 cut(s) 61, 200
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 100, 223
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 2 cut(s) 100, 223
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 98, 287
PspPPI RGGWCCY 1 cut(s) 287
RsaI GTAC 2 cut(s) 95, 164
RsaNI GTAC 2 cut(s) 94, 163
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 60, 199
Sau96I GGNCC 2 cut(s) 98, 287
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 102, 225
SduI GDGCHC 3 cut(s) 140, 254, 299
SetI ASST 5 cut(s) 18, 40, 95, 103, 247
SinI GGWCC 2 cut(s) 98, 287
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 100, 223
StyI CCWWGG 3 cut(s) 6, 43, 54
TaaI ACNGT 3 cut(s) 86, 135, 162
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 91, 140
TseI GCWGC 2 cut(s) 59, 198
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 91, 140
Vha464I CTTAAG 1 cut(s) 110
VneI GTGCAC 1 cut(s) 136
VpaK11BI GGWCC 2 cut(s) 98, 287
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.