Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004621.1

Orthogroup ID

OG0017063

Physical Location & Seq

Genomic Coordinates Forward (+)

44389 .. 44886

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004621.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggccatggctaagcttctctgccttcttcttctagctctccttgggatttccatggcagcagaaacccagtatcacttggacagtgcaaggtatggacccgggagtcttcagagttcgcaatgcccatcacagtgcacaaggagatgtagccaaacacagtaccacaagccatgcatgttcttctgccagaaatgctgtgccaagtgtctgtgtgttcccccaggcttctatggcaacaaagctgtgtgcccttgctacaacaactggaagacaaaggaaggaggacccaagtgcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0023052 GO:0032870 GO:0033993 GO:0034284 GO:0034285 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080167 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

100

Amino Acids

11.02

Weight (kDa)

8.93

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74670
fragaria_vesca	FvH4_5g14950
malus_domestica	MD14G1200300.v1.1
prunus_persica	Prupe.5G193400_v2.0.a1
pyrus_communis	pycom14g16600
rosa_chinensis	RchiOBHm_Chr7g0181391
rosa_multiflora	Rmu_sc0002060.1_g000012 Rmu_sc0004621.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272050
rosa_rugosa	Rorug06G0440600
rosa_samantha	Rh7AG042800 Rh7BG042100
rosa_wichuraiana	Rw7G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	3 cut(s)	16, 38, 245
AluI	AGCT	3 cut(s)	16, 38, 245
Alw21I	GWGCWC	1 cut(s)	140
Alw44I	GTGCAC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	98, 287
AsuC2I	CCSGG	2 cut(s)	102, 103
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	98, 287
BaeGI	GKGCMC	3 cut(s)	140, 254, 299
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	101, 278
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	2 cut(s)	102, 103
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	60
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	3 cut(s)	102, 103, 225
Bme18I	GGWCC	2 cut(s)	98, 287
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	98, 287
BmiI	GGNNCC	2 cut(s)	100, 289
BmrFI	CCNGG	3 cut(s)	102, 103, 225
BmrI	ACTGGG	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	101, 278
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuMI	CCSGG	2 cut(s)	102, 103
BsaJI	CCNNGG	5 cut(s)	6, 43, 54, 101, 223
Bse1I	ACTGG	2 cut(s)	70, 272
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	5 cut(s)	6, 43, 54, 101, 223
BseMI	GCAATG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	70, 272
BseSI	GKGCMC	3 cut(s)	140, 254, 299
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	3 cut(s)	140, 254, 299
Bsp1720I	GCTNAGC	1 cut(s)	12
Bsp19I	CCATGG	2 cut(s)	6, 54
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	100, 289
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	70, 272
BssECI	CCNNGG	5 cut(s)	6, 43, 54, 101, 223
BssT1I	CCWWGG	3 cut(s)	6, 43, 54
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	86, 135, 162
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	2 cut(s)	6, 54
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 234
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	100, 101, 223
BstSLI	GKGCMC	3 cut(s)	140, 254, 299
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	2 cut(s)	101, 278
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	6, 54
BtsIMutI	CAGTG	2 cut(s)	91, 140
Cfr13I	GGNCC	2 cut(s)	98, 287
Cfr9I	CCCGGG	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	4 cut(s)	7, 55, 174, 178
CviJI	RGCY	8 cut(s)	5, 11, 16, 38, 153, 172, 228, 245
CviKI_1	RGCY	8 cut(s)	5, 11, 16, 38, 153, 172, 228, 245
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	12
DrdI	GACNNNNNNGTC	1 cut(s)	105
DseDI	GACNNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	3 cut(s)	6, 43, 54
Eco47I	GGWCC	2 cut(s)	98, 287
Eco57I	CTGAAG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	3 cut(s)	6, 43, 54
EcoT22I	ATGCAT	1 cut(s)	179
ErhI	CCWWGG	3 cut(s)	6, 43, 54
FaeI	CATG	4 cut(s)	10, 58, 177, 181
FaiI	YATR	6 cut(s)	8, 56, 96, 175, 179, 234
FatI	CATG	4 cut(s)	6, 54, 173, 177
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	4 cut(s)	10, 58, 177, 181
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	35, 275
HpyCH4III	ACNGT	3 cut(s)	86, 135, 162
HpyCH4V	TGCA	3 cut(s)	89, 138, 177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 234
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	4 cut(s)	10, 58, 177, 181
LpnPI	CCDG	6 cut(s)	83, 115, 203, 210, 237, 253
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	35
MboII	GAAGA	5 cut(s)	20, 23, 101, 175, 283
MhlI	GDGCHC	3 cut(s)	140, 254, 299
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	1 cut(s)	278
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	133
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	102, 103, 225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	195, 234
NciI	CCSGG	2 cut(s)	102, 103
NcoI	CCATGG	2 cut(s)	6, 54
NlaIII	CATG	4 cut(s)	10, 58, 177, 181
NlaIV	GGNNCC	2 cut(s)	100, 289
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	100, 289
PspPI	GGNCC	2 cut(s)	98, 287
PspPPI	RGGWCCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	133
SatI	GCNGC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	98, 287
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	3 cut(s)	102, 103, 225
SduI	GDGCHC	3 cut(s)	140, 254, 299
SetI	ASST	4 cut(s)	18, 40, 95, 247
SinI	GGWCC	2 cut(s)	98, 287
SmaI	CCCGGG	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	133
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	100, 101, 223
StyI	CCWWGG	3 cut(s)	6, 43, 54
TaaI	ACNGT	3 cut(s)	86, 135, 162
TscAI	CASTG	2 cut(s)	91, 140
TseI	GCWGC	1 cut(s)	59
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	2 cut(s)	91, 140
VneI	GTGCAC	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	98, 287
XceI	RCATGY	1 cut(s)	181
XmaI	CCCGGG	1 cut(s)	101
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.