Rh7AG042800

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017063
Physical Location & Seq
Forward (+)
2921682 .. 2922179
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG042800.1

Sequence Viewer

Length: 303 bp
ATGGCCATGGCTAAGCGTCTCTGCCTTCTTCTTCTAGCTCTCCTTGGGATTTCCATGGCAGCAGAAACCCAGTATCACTTGGACAGTGCAAGGTATGGACCCGGGAGTCTTCAGAGTTCGCAATGCCCATCACAGTGCACAAGGAGATGTAGCCAAACACAGTACCACAAGCCATGCATGTTCTTCTGCCAGAAATGCTGTGCCAAGTGTTTGTGTGTTCCCCCAGGCTTCTATGGCAACAAAGCTGTGTGCCCTTGCTACAACAACTGGAAGACAAAGGAAGGAGGACCCAAGTGCCCTTGA

Protein Analysis

100

Amino Acids

11.07

Weight (kDa)

9.03

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 41 - 100 2.7e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74670
fragaria_vesca FvH4_5g14950
malus_domestica MD14G1200300.v1.1
prunus_persica Prupe.5G193400_v2.0.a1
pyrus_communis pycom14g16600
rosa_chinensis RchiOBHm_Chr7g0181391
rosa_multiflora Rmu_sc0002060.1_g000012 Rmu_sc0004621.1_g000013
rosa_roxburghii Rroxscaffold_3G00272050
rosa_rugosa Rorug06G0440600
rosa_samantha Rh7AG042800 Rh7BG042100
rosa_wichuraiana Rw7G003560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 164
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 38, 245
AluI AGCT 2 cut(s) 38, 245
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 23
Alw44I GTGCAC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 98, 287
AsuC2I CCSGG 2 cut(s) 102, 103
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 2 cut(s) 98, 287
BaeGI GKGCMC 3 cut(s) 140, 254, 299
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 101, 278
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 225
BcnI CCSGG 2 cut(s) 102, 103
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 60
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 3 cut(s) 102, 103, 225
Bme18I GGWCC 2 cut(s) 98, 287
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 98, 287
BmiI GGNNCC 2 cut(s) 100, 289
BmrFI CCNGG 3 cut(s) 102, 103, 225
BmrI ACTGGG 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 101, 278
Bpu1102I GCTNAGC 1 cut(s) 12
BpuMI CCSGG 2 cut(s) 102, 103
BsaJI CCNNGG 5 cut(s) 6, 43, 54, 101, 223
Bse1I ACTGG 2 cut(s) 70, 272
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 5 cut(s) 6, 43, 54, 101, 223
BseMI GCAATG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 70, 272
BseSI GKGCMC 3 cut(s) 140, 254, 299
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 23
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 3 cut(s) 140, 254, 299
Bsp1720I GCTNAGC 1 cut(s) 12
Bsp19I CCATGG 2 cut(s) 6, 54
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 100, 289
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 2 cut(s) 70, 272
BssECI CCNNGG 5 cut(s) 6, 43, 54, 101, 223
BssT1I CCWWGG 3 cut(s) 6, 43, 54
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 86, 135, 162
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 2 cut(s) 6, 54
BstMAI GTCTC 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 195, 234
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 100, 101, 223
BstSLI GKGCMC 3 cut(s) 140, 254, 299
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 2 cut(s) 101, 278
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 6, 54
BtsIMutI CAGTG 2 cut(s) 91, 140
Cfr13I GGNCC 2 cut(s) 98, 287
Cfr9I CCCGGG 1 cut(s) 101
CseI GACGC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 163
CviAII CATG 4 cut(s) 7, 55, 174, 178
CviJI RGCY 7 cut(s) 5, 11, 38, 153, 172, 228, 245
CviKI_1 RGCY 7 cut(s) 5, 11, 38, 153, 172, 228, 245
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 12
DrdI GACNNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 6, 43, 54
Eco47I GGWCC 2 cut(s) 98, 287
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 3 cut(s) 6, 43, 54
EcoT22I ATGCAT 1 cut(s) 179
ErhI CCWWGG 3 cut(s) 6, 43, 54
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 4 cut(s) 10, 58, 177, 181
FaiI YATR 6 cut(s) 8, 56, 96, 175, 179, 234
FatI CATG 4 cut(s) 6, 54, 173, 177
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 5
Hin1II CATG 4 cut(s) 10, 58, 177, 181
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 35, 275
HpyCH4III ACNGT 3 cut(s) 86, 135, 162
HpyCH4V TGCA 3 cut(s) 89, 138, 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 234
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 4 cut(s) 10, 58, 177, 181
LpnPI CCDG 6 cut(s) 83, 115, 203, 210, 237, 253
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 35
MboII GAAGA 5 cut(s) 20, 23, 101, 175, 283
MhlI GDGCHC 3 cut(s) 140, 254, 299
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 1 cut(s) 278
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 179
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 3 cut(s) 102, 103, 225
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 195, 234
NciI CCSGG 2 cut(s) 102, 103
NcoI CCATGG 2 cut(s) 6, 54
NlaIII CATG 4 cut(s) 10, 58, 177, 181
NlaIV GGNNCC 2 cut(s) 100, 289
NsiI ATGCAT 1 cut(s) 179
NspI RCATGY 1 cut(s) 181
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 100, 289
PspPI GGNCC 2 cut(s) 98, 287
PspPPI RGGWCCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 133
SatI GCNGC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 98, 287
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 3 cut(s) 102, 103, 225
SduI GDGCHC 3 cut(s) 140, 254, 299
SetI ASST 3 cut(s) 40, 95, 247
SinI GGWCC 2 cut(s) 98, 287
SmaI CCCGGG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 133
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 100, 101, 223
StyI CCWWGG 3 cut(s) 6, 43, 54
TaaI ACNGT 3 cut(s) 86, 135, 162
TscAI CASTG 2 cut(s) 91, 140
TseI GCWGC 1 cut(s) 59
TspMI CCCGGG 1 cut(s) 101
TspRI CASTG 2 cut(s) 91, 140
VneI GTGCAC 1 cut(s) 136
VpaK11BI GGWCC 2 cut(s) 98, 287
XceI RCATGY 1 cut(s) 181
XmaI CCCGGG 1 cut(s) 101
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.