AT1G76340

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011307
Physical Location & Seq
Reverse (-)
28634881 .. 28636968
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76340.1

Sequence Viewer

Length: 1119 bp
ATGTCGACGAATGATGAGGAAAATGGAACTGTAATCGAGGTTAAGAATGTTCCAGAACCAAGCCCAGAGACTTGGTATAGTGTTTTTCTTCGTCAAGCTTCTGTCTATGGTGTAGCTGCTGGTTACTGTCTCTCAGCTTCTCTTCTCTCAATCATCAACAAATGGGCAATCATGAAGTTTCCTTACCCCGGCGCATTGACCGCGATGCAGTACTTTACAAGTGCAGCTGGTGTCTTGCTTTGTGCTCAGATGAAGCTAATTGAGCATGATTCGCTTAATCTATTGACCATGTGGCGGTTTCTTCCCGCAGCTATGATATTCTACTTGTCTCTGTTTACCAACAGTGAGCTTCTCCTCCACGCCAATGTCGATACTTTCATCGTGTTTCGCTCTGCTGTTCCGATTTTCGTTGCCATTGGGGAAACGCTTTTCTTGCATCAGCCATGGCCATCTGTTAAAACGTGGGGATCTTTGGCTACTATATTTGGTGGAAGTTTGCTTTACGTTTTCACGGATTATCAGTTTACAATCGCAGCTTATAGCTGGGCTCTTGCGTATCTGGTGAGTATGACTATAGACTTTGTTTACATCAAGCATGTGGTTATGACGATTGGCTTGAACACTTGGGGACTTGTTCTCTACAATAACCTTGAGGCTCTGCTTTTGTTTCCCCTTGAGCTGCTTATAATGGGAGAGTTAAAGAAGATAAAGCATGAAATCACTGACGAGACTGATTGGTACTCGTTGCAAGTGGTTTTACCCGTGGGTTTATCGTGTCTTTTTGGCTTGGCTATCTCTTTCTTCGGGTTCTCATGTCGTCGGGCCATTTCTGCAACGGGGTTCACCGTTCTTGGAATTGTGAACAAGCTGTTGACAGTGGTGATCAATTTGATGGTGTGGGATAAACATTCAACGTTTGTTGGAACCTTGGGGCTCTTGGTTTGTATGTTTGGTGGAGTCATGTATCAACAGTCTACCATCAAGAAACCGAATGCTACACAAGAAGCTAAACCGCAAGAGCAAGACGAGGAACAAGAGAAACTTCTTGAAATGCAGGAGAACAAGGAGAGTAACAGCGTCGATATAAAGGAAACTCTGAAATCAGAAGAGAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0015780 GO:0015931 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:1901264
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

372

Amino Acids

41.74

Weight (kDa)

5.15

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 47 - 322 9.1e-16 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
AccI GTMKAC 2 cut(s) 5, 974
AccII CGCG 1 cut(s) 203
AciI CCGC 4 cut(s) 201, 295, 306, 1013
AclI AACGTT 1 cut(s) 914
AclWI GGATC 1 cut(s) 475
AcoI YGGCCR 1 cut(s) 446
AfaI GTAC 2 cut(s) 212, 740
AfiI CCNNNNNNNGG 2 cut(s) 188, 294
AgsI TTSAA 3 cut(s) 619, 912, 1049
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 4 cut(s) 62, 134, 333, 722
AlwI GGATC 1 cut(s) 475
AoxI GGCC 2 cut(s) 446, 822
ApeKI GCWGC 5 cut(s) 116, 224, 308, 533, 679
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 822
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 3 cut(s) 574, 835, 892
BalI TGGCCA 1 cut(s) 448
BanII GRGCYC 2 cut(s) 550, 936
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 5 cut(s) 103, 236, 320, 545, 666
BccI CCATC 3 cut(s) 457, 886, 986
BclI TGATCA 1 cut(s) 882
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 4 cut(s) 62, 134, 333, 722
BfmI CTRYAG 1 cut(s) 573
BisI GCNGC 5 cut(s) 117, 225, 309, 534, 680
BlsI GCNGC 5 cut(s) 118, 226, 310, 535, 681
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 1 cut(s) 925
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 195, 445
BpuEI CTTGAG 2 cut(s) 671, 695
BpuMI CCSGG 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 187, 443, 762, 927
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 294
BseDI CCNNGG 4 cut(s) 187, 443, 762, 927
BseLI CCNNNNNNNGG 2 cut(s) 188, 294
BseMII CTCAG 2 cut(s) 147, 260
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 5 cut(s) 103, 236, 320, 545, 666
BseYI CCCAGC 1 cut(s) 543
BsgI GTGCAG 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 448, 824
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 2 cut(s) 188, 294
BsmAI GTCTC 4 cut(s) 62, 134, 333, 722
BsmFI GGGAC 1 cut(s) 642
BsmI GAATGC 1 cut(s) 997
BsnI GGCC 2 cut(s) 448, 824
Bsp1286I GDGCHC 3 cut(s) 247, 550, 936
Bsp143I GATC 2 cut(s) 467, 882
Bsp19I CCATGG 1 cut(s) 443
BspACI CCGC 4 cut(s) 201, 295, 306, 1013
BspANI GGCC 2 cut(s) 448, 824
BspCNI CTCAG 2 cut(s) 146, 259
BspFNI CGCG 1 cut(s) 203
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 925
BspPI GGATC 1 cut(s) 475
BssECI CCNNGG 4 cut(s) 187, 443, 762, 927
BssMI GATC 2 cut(s) 467, 882
BssT1I CCWWGG 2 cut(s) 443, 927
Bst4CI ACNGT 6 cut(s) 31, 128, 344, 847, 877, 972
Bst6I CTCTTC 2 cut(s) 147, 1101
BstDEI CTNAG 2 cut(s) 133, 246
BstDSI CCRYGG 2 cut(s) 443, 762
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 2 cut(s) 470, 885
BstMAI GTCTC 4 cut(s) 62, 134, 333, 722
BstMBI GATC 2 cut(s) 467, 882
BstMWI GCNNNNNNNGC 5 cut(s) 200, 262, 271, 433, 830
BstNSI RCATGY 1 cut(s) 599
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 573
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 5 cut(s) 103, 236, 320, 545, 666
BstX2I RGATCY 1 cut(s) 467
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 2 cut(s) 448, 824
BtgI CCRYGG 2 cut(s) 443, 762
BtgZI GCGATG 1 cut(s) 218
BtsIMutI CAGTG 3 cut(s) 349, 720, 882
CciI TCATGA 1 cut(s) 171
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 822
CseI GACGC 1 cut(s) 1066
Csp6I GTAC 2 cut(s) 211, 739
CviAII CATG 8 cut(s) 172, 266, 289, 444, 596, 713, 813, 961
CviQI GTAC 2 cut(s) 211, 739
DdeI CTNAG 2 cut(s) 133, 246
DpnI GATC 2 cut(s) 469, 884
DpnII GATC 2 cut(s) 467, 882
EaeI YGGCCR 1 cut(s) 446
Eam1104I CTCTTC 2 cut(s) 147, 1101
EarI CTCTTC 2 cut(s) 147, 1101
Eco130I CCWWGG 2 cut(s) 443, 927
Eco24I GRGCYC 2 cut(s) 550, 936
EcoT14I CCWWGG 2 cut(s) 443, 927
EcoT38I GRGCYC 2 cut(s) 550, 936
ErhI CCWWGG 2 cut(s) 443, 927
FaeI CATG 8 cut(s) 175, 269, 292, 447, 599, 716, 816, 964
FalI AAGNNNNNCTT 2 cut(s) 1026, 1058
FaqI GGGAC 1 cut(s) 642
FatI CATG 8 cut(s) 171, 265, 288, 443, 595, 712, 812, 960
FauI CCCGC 1 cut(s) 313
FbaI TGATCA 1 cut(s) 882
FblI GTMKAC 2 cut(s) 5, 974
Fnu4HI GCNGC 5 cut(s) 117, 225, 309, 534, 680
FriOI GRGCYC 2 cut(s) 550, 936
Fsp4HI GCNGC 5 cut(s) 117, 225, 309, 534, 680
GlaI GCGC 1 cut(s) 193
GluI GCNGC 5 cut(s) 117, 225, 309, 534, 680
GsaI CCCAGC 1 cut(s) 547
HaeIII GGCC 2 cut(s) 448, 824
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 1066
HhaI GCGC 1 cut(s) 194
Hin1II CATG 8 cut(s) 175, 269, 292, 447, 599, 716, 816, 964
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 2 cut(s) 6, 873
HindII GTYRAC 2 cut(s) 6, 873
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 2 cut(s) 269, 957
HpaII CCGG 1 cut(s) 189
HphI GGTGA 3 cut(s) 574, 835, 892
Hpy166II GTNNAC 8 cut(s) 6, 336, 525, 586, 843, 862, 873, 975
Hpy188I TCNGA 4 cut(s) 249, 402, 1098, 1105
Hpy188III TCNNGA 4 cut(s) 53, 172, 982, 1046
Hpy8I GTNNAC 8 cut(s) 6, 336, 525, 586, 843, 862, 873, 975
Hpy99I CGWCG 3 cut(s) 10, 822, 1082
HpyCH4III ACNGT 6 cut(s) 31, 128, 344, 847, 877, 972
HpyCH4IV ACGT 3 cut(s) 461, 504, 914
HpyCH4V TGCA 6 cut(s) 208, 224, 436, 748, 833, 1054
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 262, 271, 433, 830
HpyF3I CTNAG 2 cut(s) 133, 246
HpySE526I ACGT 3 cut(s) 461, 504, 914
Hsp92II CATG 8 cut(s) 175, 269, 292, 447, 599, 716, 816, 964
HspAI GCGC 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 882
Kzo9I GATC 2 cut(s) 467, 882
LpnPI CCDG 8 cut(s) 66, 78, 105, 202, 213, 529, 545, 1040
Lsp1109I GCAGC 5 cut(s) 103, 236, 320, 545, 666
LweI GCATC 2 cut(s) 195, 445
MaeII ACGT 3 cut(s) 461, 504, 914
MaeIII GTNAC 2 cut(s) 122, 1070
MalI GATC 2 cut(s) 469, 884
MboI GATC 2 cut(s) 467, 882
MboII GAAGA 6 cut(s) 80, 134, 293, 715, 793, 1118
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 3 cut(s) 247, 550, 936
MlsI TGGCCA 1 cut(s) 448
MluCI AATT 3 cut(s) 258, 855, 886
MluNI TGGCCA 1 cut(s) 448
MlyI GAGTC 1 cut(s) 966
MmeI TCCRAC 1 cut(s) 901
MnlI CCTC 5 cut(s) 10, 31, 365, 646, 1021
Mox20I TGGCCA 1 cut(s) 448
MscI TGGCCA 1 cut(s) 448
MseI TTAA 4 cut(s) 42, 276, 456, 698
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 448
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 997
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 5 cut(s) 200, 262, 271, 433, 830
NciI CCSGG 1 cut(s) 189
NcoI CCATGG 1 cut(s) 443
NdeII GATC 2 cut(s) 467, 882
NlaIII CATG 8 cut(s) 175, 269, 292, 447, 599, 716, 816, 964
NlaIV GGNNCC 1 cut(s) 925
NspI RCATGY 1 cut(s) 599
PagI TCATGA 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PctI GAATGC 1 cut(s) 997
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 5 cut(s) 118, 226, 310, 535, 681
PleI GAGTC 1 cut(s) 965
PpsI GAGTC 1 cut(s) 965
PsiI TTATAA 1 cut(s) 686
Psp1406I AACGTT 1 cut(s) 914
PspFI CCCAGC 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 925
PspPI GGNCC 1 cut(s) 822
PsuI RGATCY 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 2 cut(s) 212, 740
RsaNI GTAC 2 cut(s) 211, 739
RseI CAYNNNNRTG 1 cut(s) 363
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 4 cut(s) 42, 276, 456, 698
SatI GCNGC 5 cut(s) 117, 225, 309, 534, 680
Sau3AI GATC 2 cut(s) 467, 882
Sau96I GGNCC 1 cut(s) 822
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 966
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 3 cut(s) 247, 550, 936
SfaNI GCATC 2 cut(s) 195, 445
SfcI CTRYAG 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 650, 674
SmoI CTYRAG 2 cut(s) 650, 674
Sse9I AATT 3 cut(s) 258, 855, 886
SsiI CCGC 4 cut(s) 201, 295, 306, 1013
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 2 cut(s) 443, 927
TaaI ACNGT 6 cut(s) 31, 128, 344, 847, 877, 972
TaiI ACGT 3 cut(s) 464, 507, 917
TaqI TCGA 4 cut(s) 5, 36, 369, 1080
TasI AATT 3 cut(s) 258, 855, 886
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 4 cut(s) 42, 276, 456, 698
Tru9I TTAA 4 cut(s) 42, 276, 456, 698
TscAI CASTG 3 cut(s) 349, 727, 882
TseI GCWGC 5 cut(s) 116, 224, 308, 533, 679
TspDTI ATGAA 4 cut(s) 188, 266, 367, 729
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 3 cut(s) 349, 727, 882
XceI RCATGY 1 cut(s) 599
XmiI GTMKAC 2 cut(s) 5, 974
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.