MD06G1005300.v1.1

GDP-mannose transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
591522 .. 594800
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1005300.v1.1.491

Sequence Viewer

Length: 1602 bp
ATGGGCACAGCTCGTAGTTTGACGGAGGAAGAGAGAAAGAGGGGCAGAGAAATTACTTGGGATGATAAGGAAGTCTGCGGGCACTATTTGGTTCGGTTTTGTCCGTTCCATCTCTTCGCCAATACTCGAAGCGATCTAGGACAGTGCCCTAAAATCCATGACCCGAAGTTGAAGGAAAGTTTTGAGAAGTCACCACAGCATGATGCATACGTGCCCAAGTTTGAAGCCGAACTTGCTCAGTTTTGTGAGATGTTGGTGATGGATTTGGATAGAAGAGTAAGACGTGAGCGAGAACACCGTCACCAAGAGGTGGAACCTGCACTACCACATCCACTTTCAATTGAAAAGTCCAAACATTTGTTTATTTTGGAGGATAAGTTAAAGAAGTTGCTTGAACAAGTGGAGGCCCTTGGTGAATCCAGCAAGATGGATGAAGCTGAAGTGTCCGTGAGAGAGATGTCCAATAAAATTGTTGTGGAGAATCCTCAAGTTGGTCAGGGCCGTCAGGCTCAGGGTGGTTCAAGTGCCCCTACTCTTTTTGGTAATATCCAAACAAACTGGTCCAGTGTTATACTCCAGCAGATCTCAGTCTACGGTATAGCTGCTGGTTACTGCTTATCTGCCTCATTGCTTTCCATTATCAACAAGTGGGCTGTCGTGAAATTTCCTTATCCCGGGGCCCTAACTGCTTTACAGTATTTTACAAGTGCTATGGGGGTCCTTGTATGTGGCTGGCTTAAGTTGCTAGAACATGATTCGCTTGACCTTCTTACTATGTGGCGCTTCCTACCAGCAGCAGTTATATTCTACCTCTCTCTCTTCACCAACAGTGAGCTCCTTCTTCATGCCAATGTCGACACTTTCATTGTCTTTCGTTCAGTTGTTCCAATCTTTGTTGCTATAGGAGAGACTCTCTTCTTACACCAGCCATGGCCATCAATTAGGACATGGGCCTCACTTGCCACAATTTTTGGGGGAAGTGTGATTTATGTGCTTACAGATTACCAGTTCACAGTCACGGCTTATAGTTGGGCTCTAGCTTACTTGGTAAGCATGTCCATAGATTTTGTCTACATAAAACATGTGGTAATGACCATCGGCTTAAACACATGGGGTCTTGTATTGTATAACAATCTCGAGGCTCTCCTACTGTTCCCGCTGGAACTACTTGTAATGGGTGAATTGAAGAAGATTAAGCATGAAATCACGGACGAATCAGATTGGTATTCTTTTGATGTGCTTTTGCCAGTGGGGTTATCATGTTTATTTGGTTTGTCTATCTCTTTCTTTGGGTTTTCTTGCCGAAGGGCAATTTCTGCAACTGGATTTACTGTTCTTGGTATAGTGAACAAGCTATTGACTGTTGTGATTAATCTGATTATTTGGGACAAGCATTCAACCATAGTTGGCACAGTGGGGCTGTTAATATGTATGCTAGGCGGTGTTATGTATCAGCAATCTACAAGCAACAAGCCTAAGGTTGTAAATCAGGTGAAAGCACAAGAGGCGGAGGAAGAACAACAAAAGTTAATTGAGATGAACTCCAACTTAGAAAGCAATAGCAATGAGAAATGGAATGCTGAATCAGAACAGGGAAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

534

Amino Acids

60.16

Weight (kDa)

5.75

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 1 - 154 9e-39 LUC7 N_terminus
TPT PF03151 208 - 484 3.3e-16 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
AccB7I CCANNNNNTGG 1 cut(s) 310
AccI GTMKAC 3 cut(s) 591, 855, 1071
AciI CCGC 4 cut(s) 78, 1157, 1440, 1508
AcoI YGGCCR 1 cut(s) 932
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 459
AfiI CCNNNNNNNGG 3 cut(s) 310, 491, 674
AflII CTTAAG 1 cut(s) 737
AflIII ACRYGT 1 cut(s) 1081
AgsI TTSAA 8 cut(s) 172, 224, 339, 344, 395, 522, 1186, 1398
AjiI CACGTC 1 cut(s) 284
AloI GAACNNNNNNTCC 2 cut(s) 1317, 1349
AluBI AGCT 6 cut(s) 11, 437, 602, 835, 1040, 1354
AluI AGCT 6 cut(s) 11, 437, 602, 835, 1040, 1354
Alw21I GWGCWC 1 cut(s) 837
Alw26I GTCTC 1 cut(s) 902
Ama87I CYCGRG 2 cut(s) 674, 1136
AoxI GGCC 5 cut(s) 405, 499, 678, 932, 951
ApaI GGGCCC 1 cut(s) 682
ApeKI GCWGC 2 cut(s) 602, 794
ApoI RAATTY 1 cut(s) 662
AseI ATTAAT 1 cut(s) 1371
AspLEI GCGC 1 cut(s) 783
AspS9I GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
AsuC2I CCSGG 2 cut(s) 675, 676
AsuHPI GGTGA 7 cut(s) 183, 268, 293, 425, 814, 1190, 1504
AvaI CYCGRG 2 cut(s) 674, 1136
AvaII GGWCC 2 cut(s) 561, 718
AxyI CCTNAGG 1 cut(s) 1476
BaeGI GKGCMC 6 cut(s) 8, 84, 149, 216, 529, 682
BalI TGGCCA 1 cut(s) 934
BanII GRGCYC 3 cut(s) 682, 837, 1036
Bbv12I GWGCWC 1 cut(s) 837
BbvI GCAGC 2 cut(s) 589, 806
BccI CCATC 5 cut(s) 117, 253, 421, 943, 1103
BceAI ACGGC 2 cut(s) 486, 1035
BcnI CCSGG 2 cut(s) 675, 676
BcoDI GTCTC 1 cut(s) 902
BfaI CTAG 4 cut(s) 137, 746, 1037, 1436
BfmI CTRYAG 1 cut(s) 900
BfoI RGCGCY 1 cut(s) 784
BfrI CTTAAG 1 cut(s) 737
BfuAI ACCTGC 1 cut(s) 325
BglII AGATCT 1 cut(s) 582
BisI GCNGC 2 cut(s) 603, 795
BlsI GCNGC 2 cut(s) 604, 796
Bme1390I CCNGG 2 cut(s) 675, 676
Bme18I GGWCC 2 cut(s) 561, 718
BmeT110I CYCGRG 2 cut(s) 674, 1136
BmgBI CACGTC 1 cut(s) 284
BmgT120I GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
BmiI GGNNCC 4 cut(s) 315, 679, 680, 719
BmrFI CCNGG 2 cut(s) 675, 676
BmsI GCATC 1 cut(s) 193
BplI GAGNNNNNCTC 4 cut(s) 897, 929, 1526, 1558
BpmI CTGGAG 1 cut(s) 560
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 471
BpuMI CCSGG 2 cut(s) 675, 676
BsaAI YACGTR 1 cut(s) 211
BsaJI CCNNGG 4 cut(s) 409, 674, 675, 929
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 491, 674
Bse1I ACTGG 5 cut(s) 563, 564, 1006, 1247, 1327
Bse21I CCTNAGG 1 cut(s) 1476
Bse3DI GCAATG 2 cut(s) 626, 1570
BseDI CCNNGG 4 cut(s) 409, 674, 675, 929
BseGI GGATG 3 cut(s) 67, 328, 436
BseLI CCNNNNNNNGG 3 cut(s) 310, 491, 674
BseMI GCAATG 2 cut(s) 626, 1570
BseMII CTCAG 3 cut(s) 251, 524, 600
BseNI ACTGG 5 cut(s) 563, 564, 1006, 1247, 1327
BseSI GKGCMC 6 cut(s) 8, 84, 149, 216, 529, 682
BseXI GCAGC 2 cut(s) 589, 806
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 5 cut(s) 407, 501, 680, 934, 953
BsiHKAI GWGCWC 1 cut(s) 837
BsiHKCI CYCGRG 2 cut(s) 674, 1136
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 1 cut(s) 1400
BslI CCNNNNNNNGG 3 cut(s) 310, 491, 674
BsmAI GTCTC 1 cut(s) 902
BsmFI GGGAC 1 cut(s) 1400
BsmI GAATGC 2 cut(s) 1393, 1582
BsnI GGCC 5 cut(s) 407, 501, 680, 934, 953
BsoBI CYCGRG 2 cut(s) 674, 1136
Bsp120I GGGCCC 1 cut(s) 678
Bsp1286I GDGCHC 8 cut(s) 8, 84, 149, 216, 529, 682, 837, 1036
Bsp143I GATC 2 cut(s) 133, 582
Bsp19I CCATGG 1 cut(s) 929
BspACI CCGC 4 cut(s) 78, 1157, 1440, 1508
BspANI GGCC 5 cut(s) 407, 501, 680, 934, 953
BspCNI CTCAG 3 cut(s) 250, 523, 599
BspLI GGNNCC 4 cut(s) 315, 679, 680, 719
BspMI ACCTGC 1 cut(s) 325
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 626, 1570
BsrI ACTGG 5 cut(s) 563, 564, 1006, 1247, 1327
BssECI CCNNGG 4 cut(s) 409, 674, 675, 929
BssMI GATC 2 cut(s) 133, 582
BssT1I CCWWGG 2 cut(s) 409, 929
Bst6I CTCTTC 5 cut(s) 24, 119, 268, 824, 920
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 1316
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 80, 734
BstDEI CTNAG 5 cut(s) 237, 510, 586, 1476, 1549
BstDSI CCRYGG 1 cut(s) 929
BstF5I GGATG 3 cut(s) 67, 328, 436
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 1 cut(s) 783
BstKTI GATC 2 cut(s) 136, 585
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 2 cut(s) 133, 582
BstMWI GCNNNNNNNGC 6 cut(s) 233, 686, 742, 959, 1316, 1505
BstNSI RCATGY 2 cut(s) 1057, 1085
BstSCI CCNGG 2 cut(s) 673, 674
BstSFI CTRYAG 1 cut(s) 900
BstSLI GKGCMC 6 cut(s) 8, 84, 149, 216, 529, 682
BstV1I GCAGC 2 cut(s) 589, 806
BstX2I RGATCY 1 cut(s) 582
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 1 cut(s) 582
Bsu36I CCTNAGG 1 cut(s) 1476
BsuRI GGCC 5 cut(s) 407, 501, 680, 934, 953
BtgI CCRYGG 1 cut(s) 929
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 3 cut(s) 67, 328, 436
BtsIMutI CAGTG 5 cut(s) 149, 571, 835, 1254, 1419
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 80, 734
CfoI GCGC 1 cut(s) 783
Cfr13I GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
Cfr9I CCCGGG 1 cut(s) 674
CspCI CAANNNNNGTGG 2 cut(s) 952, 987
DdeI CTNAG 5 cut(s) 237, 510, 586, 1476, 1549
DpnI GATC 2 cut(s) 135, 584
DpnII GATC 2 cut(s) 133, 582
EaeI YGGCCR 1 cut(s) 932
Eam1104I CTCTTC 5 cut(s) 24, 119, 268, 824, 920
EarI CTCTTC 5 cut(s) 24, 119, 268, 824, 920
EciI GGCGGA 1 cut(s) 1523
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 2 cut(s) 409, 929
Eco24I GRGCYC 3 cut(s) 682, 837, 1036
Eco47I GGWCC 2 cut(s) 561, 718
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 1476
Eco88I CYCGRG 2 cut(s) 674, 1136
EcoICRI GAGCTC 1 cut(s) 835
EcoO109I RGGNCCY 4 cut(s) 406, 678, 679, 718
EcoT14I CCWWGG 2 cut(s) 409, 929
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 3 cut(s) 682, 837, 1036
ErhI CCWWGG 2 cut(s) 409, 929
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 1400
FauI CCCGC 2 cut(s) 71, 1164
FblI GTMKAC 3 cut(s) 591, 855, 1071
Fnu4HI GCNGC 2 cut(s) 603, 795
FokI GGATG 3 cut(s) 74, 315, 443
FriOI GRGCYC 3 cut(s) 682, 837, 1036
Fsp4HI GCNGC 2 cut(s) 603, 795
FspBI CTAG 4 cut(s) 137, 746, 1037, 1436
GlaI GCGC 1 cut(s) 782
GluI GCNGC 2 cut(s) 603, 795
GsuI CTGGAG 1 cut(s) 560
HaeII RGCGCY 1 cut(s) 784
HaeIII GGCC 5 cut(s) 407, 501, 680, 934, 953
HapII CCGG 1 cut(s) 675
HhaI GCGC 1 cut(s) 783
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 6 cut(s) 416, 481, 755, 910, 1214, 1583
HpaII CCGG 1 cut(s) 675
HphI GGTGA 7 cut(s) 183, 268, 293, 425, 814, 1190, 1504
Hpy166II GTNNAC 5 cut(s) 592, 856, 1011, 1072, 1348
Hpy188I TCNGA 3 cut(s) 1219, 1377, 1588
Hpy188III TCNNGA 2 cut(s) 658, 1136
Hpy8I GTNNAC 5 cut(s) 592, 856, 1011, 1072, 1348
HpyAV CCTTC 4 cut(s) 166, 776, 848, 1299
HpyCH4IV ACGT 2 cut(s) 210, 283
HpyCH4V TGCA 3 cut(s) 206, 320, 1319
HpyF10VI GCNNNNNNNGC 6 cut(s) 233, 686, 742, 959, 1316, 1505
HpyF3I CTNAG 5 cut(s) 237, 510, 586, 1476, 1549
HpySE526I ACGT 2 cut(s) 210, 283
HspAI GCGC 1 cut(s) 781
Kzo9I GATC 2 cut(s) 133, 582
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 2 cut(s) 589, 806
LweI GCATC 1 cut(s) 193
MaeI CTAG 4 cut(s) 137, 746, 1037, 1436
MaeII ACGT 2 cut(s) 210, 283
MaeIII GTNAC 4 cut(s) 189, 299, 608, 1015
MalI GATC 2 cut(s) 135, 584
MboI GATC 2 cut(s) 133, 582
MboII GAAGA 9 cut(s) 41, 106, 285, 811, 833, 907, 1198, 1201, 1526
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 582
MhlI GDGCHC 8 cut(s) 8, 84, 149, 216, 529, 682, 837, 1036
MlsI TGGCCA 1 cut(s) 934
MluNI TGGCCA 1 cut(s) 934
MlyI GAGTC 1 cut(s) 904
MmeI TCCRAC 1 cut(s) 1569
Mox20I TGGCCA 1 cut(s) 934
Mph1103I ATGCAT 1 cut(s) 208
MscI TGGCCA 1 cut(s) 934
MseI TTAA 7 cut(s) 380, 738, 1103, 1194, 1371, 1424, 1529
MslI CAYNNNNRTG 1 cut(s) 849
Msp20I TGGCCA 1 cut(s) 934
MspA1I CMGCKG 1 cut(s) 1159
MspCI CTTAAG 1 cut(s) 737
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 2 cut(s) 675, 676
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 2 cut(s) 1393, 1582
MwoI GCNNNNNNNGC 6 cut(s) 233, 686, 742, 959, 1316, 1505
NciI CCSGG 2 cut(s) 675, 676
NcoI CCATGG 1 cut(s) 929
NdeII GATC 2 cut(s) 133, 582
NlaIV GGNNCC 4 cut(s) 315, 679, 680, 719
NmuCI GTSAC 3 cut(s) 189, 299, 1015
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 2 cut(s) 1057, 1085
PaeR7I CTCGAG 1 cut(s) 1136
PciI ACATGT 1 cut(s) 1081
PctI GAATGC 2 cut(s) 1393, 1582
PfeI GAWTC 5 cut(s) 416, 481, 755, 1214, 1583
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 2 cut(s) 604, 796
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
Ppu21I YACGTR 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 718
PscI ACATGT 1 cut(s) 1081
PshBI ATTAAT 1 cut(s) 1371
Psp124BI GAGCTC 1 cut(s) 837
Psp5II RGGWCCY 1 cut(s) 718
PspN4I GGNNCC 4 cut(s) 315, 679, 680, 719
PspOMI GGGCCC 1 cut(s) 678
PspPI GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
PspPPI RGGWCCY 1 cut(s) 718
PsrI GAACNNNNNNTAC 2 cut(s) 306, 338
PsuI RGATCY 1 cut(s) 582
RseI CAYNNNNRTG 1 cut(s) 849
SacI GAGCTC 1 cut(s) 837
SalI GTCGAC 1 cut(s) 854
SaqAI TTAA 7 cut(s) 380, 738, 1103, 1194, 1371, 1424, 1529
SatI GCNGC 2 cut(s) 603, 795
Sau3AI GATC 2 cut(s) 133, 582
Sau96I GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
SchI GAGTC 1 cut(s) 904
ScrFI CCNGG 2 cut(s) 675, 676
SduI GDGCHC 8 cut(s) 8, 84, 149, 216, 529, 682, 837, 1036
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 900
Sfr274I CTCGAG 1 cut(s) 1136
SinI GGWCC 2 cut(s) 561, 718
SlaI CTCGAG 1 cut(s) 1136
SmaI CCCGGG 1 cut(s) 676
SmiMI CAYNNNNRTG 1 cut(s) 849
SmlI CTYRAG 3 cut(s) 486, 737, 1136
SmoI CTYRAG 3 cut(s) 486, 737, 1136
SsiI CCGC 4 cut(s) 78, 1157, 1440, 1508
SspMI CTAG 4 cut(s) 137, 746, 1037, 1436
SstI GAGCTC 1 cut(s) 837
StyD4I CCNGG 2 cut(s) 673, 674
StyI CCWWGG 2 cut(s) 409, 929
TaiI ACGT 2 cut(s) 213, 286
TaqI TCGA 3 cut(s) 127, 855, 1137
TfiI GAWTC 5 cut(s) 416, 481, 755, 1214, 1583
Tru1I TTAA 7 cut(s) 380, 738, 1103, 1194, 1371, 1424, 1529
Tru9I TTAA 7 cut(s) 380, 738, 1103, 1194, 1371, 1424, 1529
TscAI CASTG 5 cut(s) 149, 571, 835, 1254, 1419
TseFI GTSAC 3 cut(s) 189, 299, 1015
TseI GCWGC 2 cut(s) 602, 794
Tsp45I GTSAC 3 cut(s) 189, 299, 1015
TspDTI ATGAA 5 cut(s) 447, 833, 853, 1215, 1553
TspGWI ACGGA 4 cut(s) 38, 93, 436, 1223
TspMI CCCGGG 1 cut(s) 674
TspRI CASTG 5 cut(s) 149, 571, 835, 1254, 1419
Van91I CCANNNNNTGG 1 cut(s) 310
Vha464I CTTAAG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 561, 718
VspI ATTAAT 1 cut(s) 1371
XapI RAATTY 1 cut(s) 662
XceI RCATGY 2 cut(s) 1057, 1085
XhoI CTCGAG 1 cut(s) 1136
XmaI CCCGGG 1 cut(s) 674
XmiI GTMKAC 3 cut(s) 591, 855, 1071
XspI CTAG 4 cut(s) 137, 746, 1037, 1436
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.